Jatropha Genome Database

JcCB0011301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011301.20 + phase: 0 
         (108 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008993 flap endonuclease-1, putative                            96   4e-21
29822.m003372 DNA-repair protein UVH3, putative                        60   3e-10

>30128.m008993 flap endonuclease-1, putative
          Length = 345

 Score = 95.5 bits (236), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/47 (93%), Positives = 47/47 (100%)

Query: 1  MKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSH 47
          MKEQKFESYFGRKIAIDASMSIYQFLIVVGR+G+EMLTNEAGEVTS+
Sbjct: 18 MKEQKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSY 64


>29822.m003372 DNA-repair protein UVH3, putative
          Length = 1641

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 7  ESYFGRKIAIDASMSIYQFLIVVGRTGSEMLTNEAGEVTSHLQGMFNRTIRLLESGMKPV 66
          E+  G+K+AIDAS+ I QF+  +     EM+ N      +HL G F R  +LL    KPV
Sbjct: 20 ETLSGKKLAIDASIWIVQFMKAMRNEKGEMVRN------AHLLGFFRRICKLLYLRTKPV 73

Query: 67 YVFDGQPPDLKKQELAKR 84
          +VFDG  P LK++ +  R
Sbjct: 74 FVFDGATPALKRRTVIAR 91