Jatropha Genome Database

JcCB0011271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0011271.10 - phase: 0 
         (506 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m004006 hypothetical protein                                    432   e-121
29630.m000797 ATP binding protein, putative                           214   8e-56
30174.m009128 ATP binding protein, putative                           211   6e-55
30221.m002215 DNA binding protein, putative                           129   5e-30
30174.m008627 DNA binding protein, putative                           111   8e-25
30190.m011245 DNA binding protein, putative                           101   8e-22
30221.m002214 hypothetical protein                                     51   1e-06

>30138.m004006 hypothetical protein
          Length = 473

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 223/419 (53%), Positives = 282/419 (67%), Gaps = 20/419 (4%)

Query: 106 EMAIYVSCTPEYFSPQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXX 165
           + A  +S TP+Y SP+ P RT  HH+ +YSLLL YPP++A+PIGSN+QA+IPEW+P+D  
Sbjct: 39  KFASSISYTPDYLSPEHPLRTGTHHQGLYSLLLHYPPQEAVPIGSNYQAEIPEWSPHDSK 98

Query: 166 XXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIPMPEFGLAAKVGNVRIDCNCLEKGSIV 225
                     +  D NL    KDENRLMGTCVIPMP+F    +VGNV+ DC+CL++GSI 
Sbjct: 99  SKLKSSGTPGVILDANLASGEKDENRLMGTCVIPMPDFKCIDEVGNVKNDCSCLDEGSIR 158

Query: 226 CVKQHIVEARENLKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKN 285
           CV+QHI++ARE +KR+LG ERF+ LGFC+MGE V+E W+E EEQLF EVVFSNP SLGKN
Sbjct: 159 CVRQHILKAREKVKRVLGMERFKDLGFCDMGEAVSENWTEEEEQLFHEVVFSNPVSLGKN 218

Query: 286 FWELLSSVFPSRSKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQESDDYGDSK- 344
           FW  LS+ FP R+KKDI+ YYFNVFML+RRAEQNRC SM++ DSDNDEW ESDDY  SK 
Sbjct: 219 FWSHLSAAFPFRTKKDIVCYYFNVFMLQRRAEQNRCKSMSIYDSDNDEWHESDDYDGSKC 278

Query: 345 -LVTXXXXXXXXXXXPIPQEDCTHDQSWKDDLHVCDEGAVDYDCDDNEKSDFPYDRYIMN 403
                             +++  ++QS K D+ V DEGA  Y  DD E  DF  DR I N
Sbjct: 279 ETTEEDEEDEDSVESSAHKDNLDYNQSQKHDISVLDEGAEYYAFDDLENLDFGSDRDIPN 338

Query: 404 DLGTCPSASLDYGGSK---------PKDDSC------ASSDTGGFSQGTQLKAENDDHWP 448
            L TCP  S D  GS          P D+         S  +   S G+++KA++DD WP
Sbjct: 339 FLETCPMMSFDDCGSNLKSHLLEKLPSDEMLDEEVQDVSWTSSISSPGSRVKADSDDLWP 398

Query: 449 CSVDGLSYGSGQDN---NCDIRVWDAGYLVCPKGNVDLLPTCSMIEEVFGKESWNCKAR 504
           CS + +S GSG+ +   +CD+++WDAGY++CPK  VDLLPTCSMIEEVFG  SWN K +
Sbjct: 399 CSFNEVSCGSGKTHFSESCDVKIWDAGYMICPKSKVDLLPTCSMIEEVFGDGSWNYKGK 457



 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 37/48 (77%)

Query: 1  MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASLTPCLP 48
          MV KRPFY+EEL +ISSKH RQV+YNN+LVSF EFVP + AS     P
Sbjct: 1  MVQKRPFYNEELDSISSKHQRQVEYNNQLVSFPEFVPLKFASSISYTP 48


>29630.m000797 ATP binding protein, putative
          Length = 466

 Score =  214 bits (545), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 130/346 (37%), Positives = 196/346 (56%), Gaps = 23/346 (6%)

Query: 1   MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEFVPPEVASLTPCLP-GECGLTENAIE 59
           M+ KRPF D++ Y ++ KH + +++ ++L   +  +P + A   P +P GE     N  +
Sbjct: 1   MIHKRPFVDDDSYVVARKHSKHLEHIDQL---TPILPLDDAYSKPMIPDGEDSF--NKCQ 55

Query: 60  GHERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPEYFS 119
              R  SD V    +SV  +   +  G S                  ++++    PEYF 
Sbjct: 56  DFGRSGSDPV----ISVSNEGNNLENGASGSFPHFLWINNGILEADNLSLF----PEYFD 107

Query: 120 PQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXX----- 174
                R +   ++ +S L  YP RK + IG  HQ  +P+W                    
Sbjct: 108 HGHQLRALFQPDEAFSCL-DYPFRKPVSIGPEHQVFVPDWEGVSNTSSNQLDKSNPKVAL 166

Query: 175 XMCPDTNLLLERKDENRLMGTCVIPMPEFGLAAKVGN--VRIDCNCLEKGSIVCVKQHIV 232
                ++++++   E RLMGTC+IP+PE  + A   +     +C+CL++GSI CVK+HI+
Sbjct: 167 AQSSSSSIIVDDGYEERLMGTCIIPLPEQEVPASHSSESTITNCSCLDQGSIDCVKKHIM 226

Query: 233 EARENLKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSS 292
           EAR  L+  LGK+ FE LGF +MGE VA+ W+E EEQ+F ++V +NPASLG+NFW+ LS 
Sbjct: 227 EARLKLRENLGKDIFEGLGFYDMGECVAKNWTEEEEQIFHDIVLANPASLGRNFWDHLSV 286

Query: 293 VFPSRSKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDEWQESD 338
             PSR+K++++SYYFNVFMLR+R EQNR + +N+ DSDNDEWQ SD
Sbjct: 287 ALPSRTKRELVSYYFNVFMLRKRFEQNRFDPVNI-DSDNDEWQTSD 331


>30174.m009128 ATP binding protein, putative
          Length = 527

 Score =  211 bits (537), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/343 (38%), Positives = 190/343 (55%), Gaps = 23/343 (6%)

Query: 1   MVLKRPFYDEELYNISSKHPRQVDYNNRLVSFSEF--VPPEVASLTPCLPGECGLTENAI 58
           M  KRPF  E+   +  K  RQVDY+N++  F++      E   +T    G  G ++   
Sbjct: 1   MGFKRPFDCEDFQELPFKQARQVDYSNKMTQFADLYRTTSEETDVTDDQEGSFGKSQE-- 58

Query: 59  EGHERLASDIVARFPVSVEKDVETIVPGRSLXXXXXXXXXXXXAFHPEMAIYVSCTPEYF 118
             HE   ++ V+     V KD    VP  SL             F    + ++    E+ 
Sbjct: 59  --HESSGNNCVSEASKLV-KDFGIAVPW-SLVTSNSVDDDVGSRFTAYSSDFLE--HEFD 112

Query: 119 SPQRPTRTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEW----NPYDXXXXXXXXXXX 174
            P+R    +   +D Y   L   PRK +P+G NHQA IP +    N              
Sbjct: 113 VPRR----LEASDDAYFSYLDSSPRKQVPLGPNHQASIPLFGKRVNKNQLEWEDTLDPGS 168

Query: 175 XMCPDTNLLLERKDENRLMGTCVIPMPEFGLAA----KVGNVRIDCNCLEKGSIVCVKQH 230
               +++L +   +E + +GTC+IPMP+   +A    ++G  R DC+C+++GS  CV+QH
Sbjct: 169 SSLSESDLDIHTDNEEKFLGTCIIPMPDTETSADNSDEIGGGRKDCSCMDEGSGRCVQQH 228

Query: 231 IVEARENLKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELL 290
           I+EARE+L + LG E+   LGFCEMGE+V  KW++ EE++F  VV SNPASLG+NFW+ L
Sbjct: 229 IMEARESLLKFLGHEQLVHLGFCEMGEEVTHKWTKEEERVFHAVVNSNPASLGQNFWKHL 288

Query: 291 SSVFPSRSKKDIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDE 333
           S VF +RS  +I+SYYFNVFMLRRRA QNR N +++ DSD+DE
Sbjct: 289 SHVFSTRSTMEIVSYYFNVFMLRRRAVQNRSNFLDI-DSDDDE 330


>30221.m002215 DNA binding protein, putative
          Length = 243

 Score =  129 bits (323), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/170 (40%), Positives = 101/170 (59%), Gaps = 8/170 (4%)

Query: 125 RTVAHHEDMYSLLLRYPPRKAIPIGSNHQADIPEW----NPYDXXXXXXXXXXXXMCPDT 180
           R +   +D Y   L   PRK +P+G NHQA IP +    N                   +
Sbjct: 74  RRLEASDDAYFSYLDSSPRKQVPLGPNHQASIPLFGKRVNKNQLEWEDTLDPGSSSLSKS 133

Query: 181 NLLLERKDENRLMGTCVIPMPEFGLAA----KVGNVRIDCNCLEKGSIVCVKQHIVEARE 236
           +L +   +E + +GTC+IPMP+   +A    ++G  R DC+C+++GS+ CV+QHI+EARE
Sbjct: 134 DLDIHTDNEEKFLGTCIIPMPDTETSADNSDEIGGGRKDCSCMDEGSVRCVRQHIMEARE 193

Query: 237 NLKRILGKERFEQLGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNF 286
           +L + L  E+   LGF EMGE+V  KW++ +E++F  VV SNPASLG+NF
Sbjct: 194 SLLKFLRHEQLVHLGFYEMGEEVTHKWTKEKERVFHAVVNSNPASLGQNF 243


>30174.m008627 DNA binding protein, putative
          Length = 279

 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/204 (36%), Positives = 109/204 (53%), Gaps = 32/204 (15%)

Query: 137 LLRYPPRKAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTC 196
           LL  P  K IP+G + QA+IPEW                    T ++ E   +++ +G  
Sbjct: 68  LLDLPVEKTIPLGPDFQAEIPEW--------------------TGVVCE--SDSKWIGAR 105

Query: 197 VIPMPE-----FGLAAK-VGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQ 249
           V P PE     F +  + +G  R D C C    S+ CV+ H  E R  +KR +G   F  
Sbjct: 106 VWP-PEKMDNRFVVEREPIGKGRQDSCGCEVPKSVECVRFHTTERRMKMKREVGVA-FYH 163

Query: 250 LGFCEMGEQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNV 309
             F +MGE V   W++ EE+ F  +V SNP SL K FW+ +   F ++ ++D++SYYFNV
Sbjct: 164 WRFDKMGEDVKLSWTKEEEKKFEAIVRSNPPSLDKCFWDEIFKFFSTKRREDLVSYYFNV 223

Query: 310 FMLRRRAEQNRCNSMNVDDSDNDE 333
           F+++RRA QNR    N+ DSD+DE
Sbjct: 224 FLMQRRAHQNRFTPNNI-DSDDDE 246


>30190.m011245 DNA binding protein, putative
          Length = 656

 Score =  101 bits (252), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/214 (34%), Positives = 110/214 (51%), Gaps = 35/214 (16%)

Query: 144 KAIPIGSNHQADIPEWNPYDXXXXXXXXXXXXMCPDTNLLLERKDENRLMGTCVIPMPEF 203
           + + +G   QA++PEW                    T L+ E   E++ +GT   P+ EF
Sbjct: 450 RHVSVGRRFQAEVPEW--------------------TGLVSE--SESKWLGTQAWPL-EF 486

Query: 204 G------LAAKVGNVRID-CNCLEKGSIVCVKQHIVEARENLKRILGKERFEQLGFCEMG 256
           G          +G  R + C C   GS+ CV+ HI E R  LK  LG   F    F  MG
Sbjct: 487 GEHNAMVQEDTIGKGRPESCGCELPGSVECVRFHIAENRIKLKIELGSV-FYHWKFDCMG 545

Query: 257 EQVAEKWSEGEEQLFREVVFSNPASLGKNFWELLSSVFPSRSKKDIISYYFNVFMLRRRA 316
           E++A +W+  EE+ F++VV  N  SL K FW+     F  ++K++++SYYFNVF+++RR+
Sbjct: 546 EEIALRWTAEEEKRFKDVVRFNLPSLDKFFWDNSRKYFRRKTKEELVSYYFNVFLVQRRS 605

Query: 317 EQNRCNSMNVDDSDNDEWQ---ESDDYGDSKLVT 347
            QNR    ++ DSD+DE +    SD YG   +  
Sbjct: 606 YQNRVTPKHI-DSDDDESEFGSLSDTYGQQAVTV 638


>30221.m002214 hypothetical protein
          Length = 135

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/33 (69%), Positives = 29/33 (87%), Gaps = 1/33 (3%)

Query: 301 DIISYYFNVFMLRRRAEQNRCNSMNVDDSDNDE 333
           +I+SYYFNVFMLRRRA QNR N +++ DSD+DE
Sbjct: 2   EIVSYYFNVFMLRRRAVQNRSNFLDI-DSDDDE 33