Jatropha Genome Database

JcCB0010841.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010841.20 - phase: 0 /partial
         (181 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28644.m000930 Protein ABC1, mitochondrial precursor, putative         182   7e-47

>28644.m000930 Protein ABC1, mitochondrial precursor, putative
          Length = 711

 Score =  182 bits (462), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 122/184 (66%), Gaps = 3/184 (1%)

Query: 1   SFRARTERALVKRQIEDTGSRVAIKEILSFTLTEKGSFVKEILLQEVAKGLDALGLATLD 60
           S RARTERALVKRQ ED  S+VAIKEILSFTLTEKG+FV+EILLQEVAKGLDALG+ATLD
Sbjct: 528 SLRARTERALVKRQTEDAVSKVAIKEILSFTLTEKGTFVREILLQEVAKGLDALGVATLD 587

Query: 61  FLTXXXXXXXXXXXXXXXXXMTEEDIMNXXXXXXXXXXXSGSQKNGSSIEEVKGP--YRN 118
            LT                 MTEED++N           SGSQKNGSS  EV+G   Y+ 
Sbjct: 588 SLTSVATASIPFSTPFSSSSMTEEDMVNLRTLKRLVLLLSGSQKNGSSAAEVQGSKTYKV 647

Query: 119 PNIFLEE-VSDFYQLESVQDILPVLSVIXXXXXXXXXXXXXXXADIAGRLISRATARTIR 177
            N++LEE +  FYQL SVQ+ILP LSVI                D+AGRL+SRA ART+R
Sbjct: 648 QNVYLEEALPIFYQLSSVQEILPFLSVIPELPLELQQQLLLMPGDLAGRLVSRAAARTVR 707

Query: 178 RMFL 181
           RMFL
Sbjct: 708 RMFL 711