Jatropha Genome Database

JcCB0010841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010841.10 + phase: 0 /partial
         (285 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28644.m000929 Shikimate kinase, chloroplast precursor, putative       248   2e-66
37321.m000013 conserved hypothetical protein                          175   2e-44
28256.m000141 Shikimate kinase, chloroplast precursor, putative       140   5e-34
30131.m007013 similarity to shikimate kinase, putative                 69   3e-12

>28644.m000929 Shikimate kinase, chloroplast precursor, putative
          Length = 282

 Score =  248 bits (633), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/219 (58%), Positives = 148/219 (67%), Gaps = 7/219 (3%)

Query: 37  LAPVLQSEKLHASSDENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYT 96
           LAP L S  +  S D  WLLKTKG++VA  L GC +FLV            ILSEALGYT
Sbjct: 70  LAPSLLSGNICGSFDGYWLLKTKGKKVASGLKGCCVFLVGMMGSGKTTVGKILSEALGYT 129

Query: 97  FVDRQHILACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXX 156
           FVD       SD+YVEQ  GG SV+HI++QYGE++FRD ESEAL KL +           
Sbjct: 130 FVD-------SDEYVEQTAGGNSVSHIFQQYGEDYFRDIESEALQKLSIIPRQVVATGGG 182

Query: 157 XXXXXXNWKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALS 216
                 NWKYM QGITVFLDVPLD LA+RIAA+GTDSRPLLH DSGD Y KAFMGL  LS
Sbjct: 183 SVVRPINWKYMRQGITVFLDVPLDALARRIAAVGTDSRPLLHLDSGDPYTKAFMGLFTLS 242

Query: 217 KNRFQAYSDADITVSISHLADNLGAQDVSDLEPATIALE 255
           K R +AYSDAD+ VS+  LAD+LG +DVSD+ PA IAL 
Sbjct: 243 KKRVEAYSDADVIVSLLDLADDLGFEDVSDVGPAAIALR 281


>37321.m000013 conserved hypothetical protein
          Length = 180

 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 96/130 (73%)

Query: 103 ILACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXX 162
           ++  SD+YVEQ  GG SV+HI++QYGE++FRD ESEAL KL +                 
Sbjct: 15  LVRISDEYVEQTAGGNSVSHIFQQYGEDYFRDIESEALQKLSIIPRQVVATGGGSVVRPI 74

Query: 163 NWKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSKNRFQA 222
           NWKYM QGITVFLDVPLD LA+RIAA+GTDSRPLLH DSGD Y KAFMGL  LSK R +A
Sbjct: 75  NWKYMRQGITVFLDVPLDALARRIAAVGTDSRPLLHLDSGDPYTKAFMGLFTLSKKRVEA 134

Query: 223 YSDADITVSI 232
           YSDAD+TVS+
Sbjct: 135 YSDADVTVSL 144


>28256.m000141 Shikimate kinase, chloroplast precursor, putative
          Length = 313

 Score =  140 bits (354), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 100/168 (59%), Gaps = 7/168 (4%)

Query: 40  VLQSEKLHASSDENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVD 99
           VL+S  LHASSDE+ +LK K Q V   L+G  ++LV            +LS+ LGY+F D
Sbjct: 77  VLESGSLHASSDESLILKNKSQVVEPYLSGRCIYLVGMMGSGKTTVGKVLSQVLGYSFCD 136

Query: 100 RQHILACSDKYVEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXX 159
                 C D  +EQ   G SVA I++ YGE FFR  E+E L  L +              
Sbjct: 137 ------C-DSLIEQDVDGTSVAEIFKLYGEGFFRMKETEVLKNLSMMHQIVVSTGGGAVI 189

Query: 160 XXXNWKYMSQGITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKK 207
              NW+YM +GI+V+LDVPL+ LA+RIAA+GTDSRPLLH +SGD+Y K
Sbjct: 190 RPINWEYMQKGISVWLDVPLEALAQRIAAVGTDSRPLLHHESGDAYTK 237


>30131.m007013 similarity to shikimate kinase, putative
          Length = 292

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 15/206 (7%)

Query: 51  DENWLLKTKGQEVALCLNGCSLFLVXXXXXXXXXXXXILSEALGYTFVDRQHILACSDKY 110
           D +  LK +  +++  L G S+FLV            +L+++L Y + D       SD  
Sbjct: 81  DSSLALKKRAADISPELKGTSIFLVGMRSSMKTSLGKLLADSLRYYYFD-------SDSL 133

Query: 111 VEQATGGISVAHIYEQYGENFFRDFESEALHKLCLXXXXXXXXXXXXXXXXXNWKYMSQG 170
           VE+   G S A  +++  E  FR+ E+E L +L                   N   +  G
Sbjct: 134 VEEVASGASAAKSFKETDEKGFRESETEVLKQLSSMGRLVVCAGDGAVQSFTNLALLRHG 193

Query: 171 ITVFLDVPLDTLAKRIAALGTDSRPLLHFDSGDSYKKAFMGLLALSKNRFQAYSDADITV 230
           I++++DVPLD +A+   A+  +S  L   DS +        L+A  +     Y+ AD T+
Sbjct: 194 ISLWIDVPLDMVAQ---AMSEESDQLSGADSEE-----LTELIATFEAMRGGYATADATI 245

Query: 231 SISHLADNLGAQDVSDLEPATIALEV 256
           S+  +A NLG   +  +    + LEV
Sbjct: 246 SLQKVAVNLGYDALDSVTAEDMTLEV 271