Jatropha Genome Database

JcCB0010451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0010451.20 + phase: 0 
         (501 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003428 Tocopherol cyclase, chloroplast precursor, putative     807   0.0  

>29794.m003428 Tocopherol cyclase, chloroplast precursor, putative
          Length = 505

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/512 (76%), Positives = 442/512 (86%), Gaps = 18/512 (3%)

Query: 1   MEVNLQYSLPHHHQFSPNWGFSA-IKSNSSFKLFQSSKQRPSNSLFHSLNSGFRSSNSRI 59
           ME N++ SL   H FS N GF A I  +S+FK F+ S  RP       LN    + +SR+
Sbjct: 1   METNVRCSLHDLHPFSSNLGFRANINPSSTFKPFRCSHFRP-------LNKAAGAPSSRL 53

Query: 60  FVSNSVTNPET----------EFLSSVSPVYAPTPPNRELRTPHSGYHFDGTTRQFFEGW 109
            +SNS+TN +T          E  SSVSP+Y PTP NR+LRTPHSGYHFDGT R+FFEGW
Sbjct: 54  SLSNSLTNSDTSTSAERGRMIESASSVSPLYVPTPSNRQLRTPHSGYHFDGTARKFFEGW 113

Query: 110 YFKVSIPERKQSFCFMYSLENPAFRKKLTPFEVAQHGPRSTGVGAQILGAYDKYICQHVE 169
           YF+VSIPERKQSFCFMY++ENPAFR K+TP E+AQHGPRSTGV AQILGA DKYICQ  E
Sbjct: 114 YFRVSIPERKQSFCFMYAVENPAFRSKMTPLEIAQHGPRSTGVMAQILGADDKYICQCSE 173

Query: 170 ESQNFWGNRHELVLGNTFVAEKGMQPPTKEVPPQDFSRRVSEGFQVTPLWHQGFIRDDGR 229
           ESQNFWG+RHELVLG+TFV EKGMQPPTKEVPP++F++RVSEGFQVTPLWHQGFIRDDGR
Sbjct: 174 ESQNFWGSRHELVLGSTFVPEKGMQPPTKEVPPEEFNKRVSEGFQVTPLWHQGFIRDDGR 233

Query: 230 SDYVQTVKTARWEYSTRPVYGWGDVGSKQKSTAGWLAAFPVFEPHWQICMAGGLSTGWIE 289
           SDYV+TVKTA WEYSTRP+YGWGDV SKQKSTAGWLAA PVFEPHWQICMAGGLSTGWIE
Sbjct: 234 SDYVETVKTASWEYSTRPIYGWGDVESKQKSTAGWLAALPVFEPHWQICMAGGLSTGWIE 293

Query: 290 WDGERFEFKDAPSYSEKNWGAGFPRKWFWVQCNVFEGAIGEVALTAAGGLRQLPGLTENF 349
           WDGER+EF+DAPSYSEKNWG GFPRKWFWVQCNVFEGA GE+ALT  GGLRQLPGLTENF
Sbjct: 294 WDGERYEFQDAPSYSEKNWGGGFPRKWFWVQCNVFEGATGEIALTVGGGLRQLPGLTENF 353

Query: 350 ESAALIGVHYEGIFYEFVPWNGVLNWEISPWGYWFITAENKSHLVELKATTKDPGTTLRA 409
           E+AAL+GVHY+G FYEFVPWNGV+NWE+SPWG+WF TAEN++HLVEL+ATTKDPGT L A
Sbjct: 354 ENAALVGVHYDGNFYEFVPWNGVVNWEVSPWGHWFFTAENETHLVELEATTKDPGTPLLA 413

Query: 410 PTTESGFAPACKDTCFGDLKLQIWERRYDGTKGKMILDVTSDMAAVEVGGGPWFNTWKGK 469
           PT E G APAC+DTCF DLKLQ+WERRYDG+KGK+ILDVTSDMAAVEVGGGPWFNTWKGK
Sbjct: 414 PTAEVGLAPACRDTCFADLKLQMWERRYDGSKGKLILDVTSDMAAVEVGGGPWFNTWKGK 473

Query: 470 TTTPELLNRALNVPVDVEGIFNFLPLFKPPGL 501
           T+TPELL+RAL VPVD++ I +FLPLFKPPGL
Sbjct: 474 TSTPELLSRALQVPVDMDEILSFLPLFKPPGL 505