Jatropha Genome Database

JcCB0009671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009671.20 - phase: 0 
         (366 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29841.m002921 homoserine kinase, putative                             616   e-177
29841.m002917 hypothetical protein                                    120   7e-28

>29841.m002921 homoserine kinase, putative
          Length = 367

 Score =  616 bits (1588), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 309/366 (84%), Positives = 331/366 (90%)

Query: 1   MAICFLSPSKPVTFSPSLQNKRPPPLLRCNFALPTIATTEPEPVYTSVRSFAPATVANLG 60
           MAICF SP KP++ SPS    +P PLLRCNF+LPTI TTEPEPV+TSV+SFAPATVANLG
Sbjct: 1   MAICFYSPLKPISLSPSTHFTKPQPLLRCNFSLPTITTTEPEPVFTSVKSFAPATVANLG 60

Query: 61  PGFDFLGCAVDGLGDFVAVRIDPSVHPGEISISDITGTHASKKLSKNPLWNCATIAAIAA 120
           PGFDFLGCAVDGLGDFV V +DPSVHPGEISI++I+GTHASKKLSKNPLWNCA IA IA 
Sbjct: 61  PGFDFLGCAVDGLGDFVTVTVDPSVHPGEISIAEISGTHASKKLSKNPLWNCAGIAGIAT 120

Query: 121 MKMLNIRSVGLSLTLEKGLPLGSGLGXXXXXXXXXXXXXNEIFGGKLQVKDLVRAGLESE 180
           MKMLN+RSVGLSLTLEKGLPLGSGLG             NEIFGGKL VK+LV AGLESE
Sbjct: 121 MKMLNVRSVGLSLTLEKGLPLGSGLGSSAASAAAAAVAVNEIFGGKLDVKELVLAGLESE 180

Query: 181 AKVSGYHADNIAPAIMGGFVLIRNYNPLELMSLNFPEEKEIFFVLVSPDFEAPTKKMRAA 240
           AKVSGYHADNIAPAIMGGFVLI+NY PLELM L FP EK++FFVLVSPDFEAPTKKMRAA
Sbjct: 181 AKVSGYHADNIAPAIMGGFVLIKNYEPLELMRLKFPVEKDLFFVLVSPDFEAPTKKMRAA 240

Query: 241 LPAEVGIPHHVWNCSQAGALVASVLQGDLVGLGKALSNDKIVEPKRAPLIPGMEEVKKAA 300
           LPAE+G+PHHVWNCSQAGALVASVLQGDLVGLGKALS+DKIVEPKRAPLIPGMEEVKKAA
Sbjct: 241 LPAEIGMPHHVWNCSQAGALVASVLQGDLVGLGKALSSDKIVEPKRAPLIPGMEEVKKAA 300

Query: 301 ISAGAFGCTISGAGPTAVAVIDDEERGKEIGEKMVEAFLKEGNLKAVAMVKRLDRVGARL 360
           I+AGAFGCTISGAGPTAVAVIDDEERG EIGEKMV+AFLKEGNLKAVAMVKRLDR+GARL
Sbjct: 301 IAAGAFGCTISGAGPTAVAVIDDEERGTEIGEKMVDAFLKEGNLKAVAMVKRLDRIGARL 360

Query: 361 VGSVPT 366
           VG+VP 
Sbjct: 361 VGNVPN 366


>29841.m002917 hypothetical protein
          Length = 76

 Score =  120 bits (302), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 66/74 (89%)

Query: 249 HHVWNCSQAGALVASVLQGDLVGLGKALSNDKIVEPKRAPLIPGMEEVKKAAISAGAFGC 308
           H+  NCSQAGALVA VLQGDLVGLGK LSNDK+VEPKRA L+PGMEEVKK+AI+ GAFG 
Sbjct: 3   HYFRNCSQAGALVAFVLQGDLVGLGKTLSNDKVVEPKRARLVPGMEEVKKSAIAPGAFGY 62

Query: 309 TISGAGPTAVAVID 322
           T+SGAGPT VAV++
Sbjct: 63  TVSGAGPTTVAVVN 76