Jatropha Genome Database

JcCB0009541.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.40 + phase: 0 /partial
         (190 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014368 superoxide dismutase [fe], putative                     298   1e-81
29799.m000633 superoxide dismutase [fe], putative                     166   9e-42
29729.m002354 superoxide dismutase [mn], putative                      78   3e-15
29729.m002353 superoxide dismutase [mn], putative                      74   5e-14
33549.m000044 superoxide dismutase [fe], putative                      64   5e-11

>30147.m014368 superoxide dismutase [fe], putative
          Length = 305

 Score =  298 bits (762), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/190 (78%), Positives = 164/190 (86%)

Query: 1   MVXXXXXXXSLTCALFPHHGGLSRTTSAFKWRKERHVRRQTGSAIVTAKFELKPPPYPLN 60
           MV       SLTCALFP  GG S  T   +W ++R   R+T  A +TA FELKPPPYPL+
Sbjct: 1   MVAVAAASTSLTCALFPSQGGFSVATRRSQWTEKRKCTRKTTPARITAIFELKPPPYPLD 60

Query: 61  ALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLEDVVIVTYNKGDVLPAFNNA 120
           ALEP MSKDTLEYHWGKHHRAYVDNLNKQIVGTELD + LEDVV+VTYNKGD+LPAFNNA
Sbjct: 61  ALEPLMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDGMSLEDVVLVTYNKGDMLPAFNNA 120

Query: 121 AQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSFKKFVEEFRSAAATQFGSGWAWLAY 180
           AQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSF++FVEEF++AAATQFGSGWAWLAY
Sbjct: 121 AQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSFERFVEEFKAAAATQFGSGWAWLAY 180

Query: 181 KANRLNVENA 190
           KANRL+VENA
Sbjct: 181 KANRLDVENA 190


>29799.m000633 superoxide dismutase [fe], putative
          Length = 265

 Score =  166 bits (419), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/150 (54%), Positives = 103/150 (68%), Gaps = 2/150 (1%)

Query: 33  KERHVRRQTGSAIVTAKFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVG 92
           K++  + Q  S +V A + LK PPYPL+ALEP+MS+ TLE HWG+HHRAYV+ LNKQ+  
Sbjct: 36  KQKRRQFQRASKLV-AYYGLKTPPYPLDALEPYMSRKTLEIHWGEHHRAYVEGLNKQLAK 94

Query: 93  TE-LDSLPLEDVVIVTYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGGGKPSGELLQLIER 151
            + L    ++++V VTYN G+  P FNNAAQ WNH+FFW  M+P GG  P   +LQ IE+
Sbjct: 95  DDILYGYTMDELVKVTYNNGNPFPEFNNAAQVWNHDFFWESMQPAGGEMPELGVLQQIEK 154

Query: 152 DFGSFKKFVEEFRSAAATQFGSGWAWLAYK 181
           DFGSF  F E+F   A T FGSGW WL  K
Sbjct: 155 DFGSFTNFKEKFIEEALTLFGSGWIWLVLK 184


>29729.m002354 superoxide dismutase [mn], putative
          Length = 234

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 50  FELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLEDVVIVTYN 109
           F L   PY  +ALEP +S + ++ H  KHH+ Y+ N NK +   EL +  +E     +  
Sbjct: 32  FTLPDLPYDYSALEPVISGEIMQLHHQKHHQTYITNYNKSL---ELLNEAMEKGDSSSVV 88

Query: 110 KGDVLPAFNNAAQAWNHEFFWGCMKP---GGGGKPSGELLQLIERDFGSFKKFVEEFRSA 166
           K      FN      NH  FW  + P   GGG  P G L   I+ DFGS +K +++  + 
Sbjct: 89  KLQSAIKFNGGGHI-NHSIFWNNLAPVREGGGEPPHGSLGWAIDTDFGSLEKLIQKMNTE 147

Query: 167 AATQFGSGWAWL 178
            A   GSGW WL
Sbjct: 148 GAAVQGSGWVWL 159


>29729.m002353 superoxide dismutase [mn], putative
          Length = 239

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 17/131 (12%)

Query: 56  PYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNKQIVGTELDSLPLEDVVIVTYNKGDVLP 115
           PY  +ALEP +S + +  H  KHH AYV N NK        SL L +  I   +   V+ 
Sbjct: 43  PYAYDALEPFISGEIMFLHHQKHHLAYVTNYNK--------SLELLNQAIANGDSSSVVK 94

Query: 116 -----AFNNAAQAWNHEFFWGCMKP---GGGGKPSGELLQLIERDFGSFKKFVEEFRSAA 167
                 FN      NH  FW  + P   GGG  P G L   I+ +FGS +K +++  +  
Sbjct: 95  LQSSIKFNGGGHI-NHSIFWKNLAPVSEGGGIPPHGSLASAIDTEFGSLEKLIQKMNAEG 153

Query: 168 ATQFGSGWAWL 178
           A   GSGW WL
Sbjct: 154 AAVEGSGWVWL 164


>33549.m000044 superoxide dismutase [fe], putative
          Length = 244

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 49  KFELKPPPYPLNALEPHMSKDTLEYHWGKHHRAYVDNLNK--QIVGTELDSLPLEDVVIV 106
           K+   P P+  +ALEP +   T+E H+  HH+  V   NK    +    DS    D  +V
Sbjct: 44  KYAAGPLPFAYDALEPAIDARTVELHYNFHHKPAVAAANKAEDALAKARDS---NDFALV 100

Query: 107 TYNKGDVLPAFNNAAQAWNHEFFWGCMKPGGGGKPSGELLQLIERDFGSFKKFVEEFRSA 166
            + + ++  AF  ++    H  +W  +  G GG+P G+L + I+R+FGS+ KF  +  +A
Sbjct: 101 KFYEKEL--AFQLSSHIL-HTVYWTSIS-GKGGEPKGDLAKAIDRNFGSYAKFKGQLIAA 156

Query: 167 AATQFGSGWAWLAY 180
                 SGW  + Y
Sbjct: 157 TVAVEASGWGVVGY 170