Jatropha Genome Database

JcCB0009541.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009541.20 - phase: 0 
         (166 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014366 conserved hypothetical protein                          108   1e-24

>30147.m014366 conserved hypothetical protein
          Length = 161

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 80/137 (58%), Gaps = 45/137 (32%)

Query: 1   MTPNSNFHEMEVEDRNAQADAA--TVENNEILETGECNTRNVVGILTRLRSGTISPVKYF 58
           +TPN N HE+E ED+NA A+A    +ENNE   TGE N RN++                 
Sbjct: 58  LTPN-NTHEVEAEDQNALAEAGQLAIENNE---TGEWN-RNLL----------------- 95

Query: 59  PRVSATSCQXXXXXXXXXXXXETLLRRHSLPVRPCSSYSFFVMANWGSVKNSSFSEVSKT 118
                                ET+LRRHSLP RPCSSY+ FVM+NW SVKNSSF E SK+
Sbjct: 96  ---------------------ETVLRRHSLPARPCSSYALFVMSNWVSVKNSSFGEASKS 134

Query: 119 LGQMWGQLSGQEKKVFM 135
           LG++WGQLS QEKKVF+
Sbjct: 135 LGRIWGQLSLQEKKVFI 151