Jatropha Genome Database

JcCB0009521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0009521.10 - phase: 1 /pseudo/partial
         (167 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          139   5e-34

>27810.m000636 conserved hypothetical protein
          Length = 1054

 Score =  139 bits (351), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 75/109 (68%), Gaps = 23/109 (21%)

Query: 58  LHKFVKDAVERDHKLDDILIPIIQHVLLISKFPFCTLLIFDVKSSINFSLRSKDLKHGGQ 117
           LHKFVKDAVERDH +DDILIPIIQH L+                        KDLKHGGQ
Sbjct: 67  LHKFVKDAVERDHPMDDILIPIIQHPLM-----------------------RKDLKHGGQ 103

Query: 118 ALILINWLFQDEFFFQAVVRSLADIIDRKDDRYIALGWCILIRGLVEYE 166
            +IL+NWLFQDEF FQAV RSL DII RKDDR+IAL WCI IR LVEYE
Sbjct: 104 GMILVNWLFQDEFLFQAVARSLGDIILRKDDRFIALAWCIFIRSLVEYE 152