Jatropha Genome Database

JcCB0008691.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008691.20 + phase: 0 
         (248 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003727 conserved hypothetical protein                          257   3e-69
29727.m000494 conserved hypothetical protein                          158   2e-39
29739.m003659 conserved hypothetical protein                           54   5e-08

>29739.m003727 conserved hypothetical protein
          Length = 289

 Score =  257 bits (657), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/266 (55%), Positives = 176/266 (66%), Gaps = 30/266 (11%)

Query: 1   MASSPEFVEFAGQKASRSPEKSNFSQTCSLLSQYLKERGSFGDLSLGMTCNGE------- 53
           MA SPEFV  +GQK +R  EK++FSQ CSLLSQYLKE+GSFGDLSLG+TCN         
Sbjct: 1   MAGSPEFVGLSGQKTARLSEKNSFSQKCSLLSQYLKEKGSFGDLSLGITCNNSNNNADAK 60

Query: 54  ---GSGNGSTPETLHQTAAATTMNLFPMNDKQDDISSRKMAASRTNFRSMDLFPQQAGFA 110
              G+GNG++ + + QT   TTMNLFPM++K  D+ +R M    TN RSMDLFPQQ+GF 
Sbjct: 61  INTGNGNGAS-DMIKQT---TTMNLFPMSEKHVDVPNRNMV---TNCRSMDLFPQQSGFV 113

Query: 111 -----PKEETQKKVDS---RAATPEPQTAQMTIFYAGKVIVFNDFPADKAKEIMQLASKG 162
                PKE+ QK+ DS   + A+PE Q AQ+TIFYAG+VIVFNDFPADKAKE+M LA+KG
Sbjct: 114 TTTPEPKEDMQKRADSSVHKPASPESQNAQLTIFYAGQVIVFNDFPADKAKEVMLLATKG 173

Query: 163 SSQNFTRFPSAPVKSVSPVFAPNAAARPTIEXXXXXXXXXXXXXXXXXXXXLIQDHIQPS 222
           +S N  RFPS PVKS  P FAP+ +  P                       LIQ+     
Sbjct: 174 NSLN--RFPSVPVKSHPPAFAPSVSKAPA---ESNSSLSSASNAVLNFSNNLIQERKLTP 228

Query: 223 PQTITSDLPIARRASLQRFLEKRKDR 248
           P TI SDLPIARRASL RFLEKRK+R
Sbjct: 229 PPTIGSDLPIARRASLHRFLEKRKER 254


>29727.m000494 conserved hypothetical protein
          Length = 269

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 133/234 (56%), Gaps = 34/234 (14%)

Query: 20  EKSNFSQTCSLLSQYLKERGSFGDLSLGMTCNGEGSGNGSTPETLHQTAAATTMNLFPMN 79
           EK+NF+QTC+LLSQYLKERGSFG+++ G+T   E +       T      ATT+NL P  
Sbjct: 15  EKTNFAQTCNLLSQYLKERGSFGNITYGITSKPEANKGPEASRT-----PATTLNLLPSM 69

Query: 80  DKQDDISSRKMAASRTNFRSMDLFPQQAGFA---PKE-ETQKKVDSRAATP-EPQTAQMT 134
           +   + SSR+     TN + M+LFPQ  GF+   P E  T K  D R ++  +  TAQMT
Sbjct: 70  ENPAENSSRQDYVPSTNIKPMELFPQLVGFSSQNPVEGSTNKAADLRKSSKGDSTTAQMT 129

Query: 135 IFYAGKVIVFNDFPADKAKEIMQLASKGSSQNFTRFPSAPVKSVSPVFAPNAAARPTIEX 194
           IFY G+V+VF+DFPA+KAKEI+ LASKG+S     F +A     S V   N +A      
Sbjct: 130 IFYGGQVMVFDDFPAEKAKEIIALASKGTSNTTNGFTTA-----SAVEKANQSA------ 178

Query: 195 XXXXXXXXXXXXXXXXXXXLIQDHIQPSPQTITSDLPIARRASLQRFLEKRKDR 248
                               +++ +Q  PQ   SDLPIARRASL RF EKRKDR
Sbjct: 179 -------------IAPPPNKVREGLQLRPQADDSDLPIARRASLHRFFEKRKDR 219


>29739.m003659 conserved hypothetical protein
          Length = 220

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 28/127 (22%)

Query: 132 QMTIFYAGKVIVFNDFPADKAKEIMQL----------ASKGSSQNFTRFPSAPVKSVSPV 181
           Q+TIFY G V+VF+  PA+K +EI+ +          A    +   +   + PV + SP 
Sbjct: 64  QLTIFYGGNVLVFDAIPAEKVREILFIAAAAAAAVKPADTKKTAAVSPASNTPVLTRSPS 123

Query: 182 FAPNAAARPTIEXXXXXXXXXXXXXXXXXXXXLIQDHIQPSPQTITSDLPIARRASLQRF 241
                +A P+ +                    L   H   S   + ++ PIARR SLQRF
Sbjct: 124 LQSTTSALPSPQ------------------AQLYPIHQASSLCKMQAEFPIARRNSLQRF 165

Query: 242 LEKRKDR 248
            EKR+DR
Sbjct: 166 FEKRRDR 172