Jatropha Genome Database

JcCB0008641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008641.10 + phase: 2 /pseudo/partial
         (246 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27894.m000780 conserved hypothetical protein                          315   1e-86

>27894.m000780 conserved hypothetical protein
          Length = 565

 Score =  315 bits (808), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 145/167 (86%), Positives = 160/167 (95%), Gaps = 1/167 (0%)

Query: 41  KPWEQWTLVSEVVLEAGKQ-RIDKWNLMGRLGNQARKLITQCAAWFRPDIIYVKRPVYQC 99
           K WEQWTLVSE+V+EAGKQ R+DKWNLMGRLGN ARKLITQCAAWFRPDIIYVKRPVYQC
Sbjct: 210 KSWEQWTLVSEIVVEAGKQQRLDKWNLMGRLGNTARKLITQCAAWFRPDIIYVKRPVYQC 269

Query: 100 RFEPQEDFFRGLVPFLDPKTERDFIFELRNEEDGGSVEMCTYYEGLCKIVKVSQKAYVDD 159
           RFEPQ DFF+ L P LDPKTE+DF+FEL+NEEDGG++EMC+Y+EGLCKIVK+SQKA+VDD
Sbjct: 270 RFEPQMDFFKALTPLLDPKTEKDFMFELKNEEDGGNIEMCSYFEGLCKIVKISQKAFVDD 329

Query: 160 VVNAYEKLSEEKKSRCLEFLLRNHPVQLLHPYTKEWKAKLEEMELGC 206
           VVNAYEKLSEEKKS+CLEFLLRNHPVQLLHPYTKEWKAKL+EMELGC
Sbjct: 330 VVNAYEKLSEEKKSKCLEFLLRNHPVQLLHPYTKEWKAKLDEMELGC 376