Jatropha Genome Database

JcCB0008631.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.30 + phase: 0 /partial
         (197 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28176.m000272 Selenoprotein T precursor, putative                     239   5e-64

>28176.m000272 Selenoprotein T precursor, putative
          Length = 230

 Score =  239 bits (610), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/199 (65%), Positives = 143/199 (71%), Gaps = 2/199 (1%)

Query: 1   MDRSQXXXXXXXXXXXXTDIVNLFTIQPPP-KPALNDYNIIXXXXXXXXXXXXXXXXXXX 59
           MDRSQ            +DI+NLFT+ PPP KP  + + I                    
Sbjct: 1   MDRSQLLLLGLPIFLLFSDILNLFTVSPPPPKPTQHVHKIQSNHNHLLQQPQPQSQPLQF 60

Query: 60  -XXKSPSMAIGGLGDTGTGSTVNIDFCASCSYRGTAITMKNMLETQFPGINIVLANYPPS 118
              KS  +  G  G TG G+TVNIDFCASCSYRGTA+TMKNMLE+Q+PGINIVLANYPPS
Sbjct: 61  PTQKSSDVIGGAGGLTGIGNTVNIDFCASCSYRGTAMTMKNMLESQYPGINIVLANYPPS 120

Query: 119 LPKRLLSKVVPVFQFGIIGLIMGGEQIFPKLGFAVPPSWYYSLRANRFGSIASTWLFGNF 178
            PKRLLSKVVPV QFGIIGLI  GE IFP+LGFAVPP WYYSLRAN+FGSIASTWLFGNF
Sbjct: 121 FPKRLLSKVVPVVQFGIIGLITAGEHIFPRLGFAVPPPWYYSLRANKFGSIASTWLFGNF 180

Query: 179 IQSFLQSSGAFEVYCNGEL 197
           IQSFLQSSGAFEVY NGEL
Sbjct: 181 IQSFLQSSGAFEVYFNGEL 199