Jatropha Genome Database

JcCB0008631.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008631.20 + phase: 0 /partial
         (245 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001180 transcription factor, putative                          135   2e-32

>29709.m001180 transcription factor, putative
          Length = 490

 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 88/173 (50%), Gaps = 5/173 (2%)

Query: 36  QGFYMENHRNGNTIMNTRSIHKLYRNGI-XXXXXXXXXXXXXXXXXXXXFRIRIPTEVSI 94
           QGFYMEN RNG +++NTRSIHKLYRNGI                     FRIRIPT VSI
Sbjct: 299 QGFYMENQRNGGSVLNTRSIHKLYRNGIGVNTGSNMNSGASASASAASGFRIRIPTGVSI 358

Query: 95  AQPGPKFYAKVDQKYTGXXXXXXXXXXXXXFXXXXXXXXXXXXXXXXXXXDEIGKKRERE 154
           AQP PKFY   DQKY G                                 DEIGKKRER+
Sbjct: 359 AQPAPKFY---DQKY-GVNPNSIPKPNFGGAGSGSVSGSGLASGRVLRGSDEIGKKRERD 414

Query: 155 PMEEMVAAVKVLGDGFVRMEQMKXXXXXXXXXXXXXXXXXXXXXILESQQHIV 207
           PMEEMVAA+KVLGDGFVRMEQMK                     IL SQQ IV
Sbjct: 415 PMEEMVAAIKVLGDGFVRMEQMKMEMAREIETMRMDMEMKRTEMILHSQQRIV 467