Jatropha Genome Database

JcCB0008321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.20 + phase: 0 /partial
         (152 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006860 conserved hypothetical protein                          129   5e-31

>30131.m006860 conserved hypothetical protein
          Length = 321

 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 87/156 (55%), Gaps = 9/156 (5%)

Query: 1   MMKEQGAGHEKPEARAWMAGGDVVTVEGDKAXXXXXXXXXXXXXXXXXRIGLTR----NE 56
           M  E+GA HEKPEA  W+  GD VT EGD                    + +TR    ++
Sbjct: 1   MKTERGAVHEKPEACTWITSGDSVTEEGDNKANNTFEEASSDQGSGRT-VMMTRSSGDDD 59

Query: 57  VVAAVLGFGVIRKKRMPRQRRPSSAINHLFSFXXXXXXXXXXXXXXXXXXXXXXXXXXXX 116
            V AVLGF VIRKKRMPRQRRPSS+IN+LFSF                            
Sbjct: 60  NVVAVLGFSVIRKKRMPRQRRPSSSINNLFSF----PIATNASSSSSSTTTTTTSHVPDL 115

Query: 117 XXXXARVIDQRRLSFLFQKELKNSDVSSLKRMILPK 152
               ARVIDQRRLSFLFQKELKNSDVSSLKRM+LPK
Sbjct: 116 PSFPARVIDQRRLSFLFQKELKNSDVSSLKRMVLPK 151