Jatropha Genome Database

JcCB0008321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008321.10 + phase: 0 /pseudo/partial
         (160 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008962 ubiquitin-protein ligase, putative                      119   4e-28

>30174.m008962 ubiquitin-protein ligase, putative
          Length = 561

 Score =  119 bits (299), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/113 (57%), Positives = 78/113 (69%), Gaps = 13/113 (11%)

Query: 6   SVVNEITQNLAEEGSGKFMINLVDCGILF-------------TANNDNLKRIIISKDRIR 52
           SVV E+ QNLAEEG  K MINL+DCGIL              TA NDNL+RI+IS+  IR
Sbjct: 307 SVVPEVRQNLAEEGIVKIMINLLDCGILLGSKEYAAECLQNLTATNDNLRRIVISEGGIR 366

Query: 53  NPLAYLDGPLPQESVVRTLKNLVILVSAEIMASLGFLSSLIHVIEPGSLGAQK 105
           + LAYLDGPLPQES V  L+NLV  VS E + +L FL  L+HV++ GSLGAQ+
Sbjct: 367 SLLAYLDGPLPQESAVGALRNLVSSVSMEQLVTLNFLPRLVHVLKSGSLGAQQ 419