Jatropha Genome Database

JcCB0008031.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0008031.20 + phase: 0 
         (481 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29950.m001179 conserved hypothetical protein                          756   0.0  

>29950.m001179 conserved hypothetical protein
          Length = 484

 Score =  756 bits (1953), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/485 (78%), Positives = 416/485 (85%), Gaps = 5/485 (1%)

Query: 1   MALAANSIYLSHEESISSSYIKSGI----ERFHGRKGLHFRSIVVLKILPNSRKSRRHVQ 56
           MALAANSI LSHEESISSS  KSG     ERF  R+G H  S+ VL+  P SRKSR +VQ
Sbjct: 1   MALAANSICLSHEESISSSCFKSGFAISDERFQLRRGSHSHSVFVLRFFPKSRKSR-YVQ 59

Query: 57  LIRSYRNYCGLVLRCSHQFSGWTNKFPSFSSTAASINKAKEVLNFLMLSVSNNLKEKGQL 116
           L  ++RNY GL LRCSH+FSGWT K  S  ST ASI K  E ++FLM++VSN+LK + + 
Sbjct: 60  LKSTHRNYRGLQLRCSHRFSGWTKKLSSLCSTGASITKVNEAVDFLMINVSNSLKVRSRF 119

Query: 117 QFLKVAGILACALLVIPSADAVDALKTCACLLKECRLELXXXXXXXXXXXXXXXLQTCNN 176
           Q LKVAGILACALL+IPSADAVDALKTC CLLKECRLEL               LQTCNN
Sbjct: 120 QLLKVAGILACALLIIPSADAVDALKTCTCLLKECRLELVKCIANPACAANVACLQTCNN 179

Query: 177 RPDETECQIKCGDLFENNVVDEFNECAVSRKKCVPKKSDVGEFPVPDPAVLVKSFNIADF 236
           RPDETECQIKCGDLF+N+VVDEFNECAVSRKKCVP+KSDVG+FPVPDPAVLVKSFNIADF
Sbjct: 180 RPDETECQIKCGDLFQNSVVDEFNECAVSRKKCVPQKSDVGDFPVPDPAVLVKSFNIADF 239

Query: 237 SGKWFITSGLNPTFDTFDCQLHDFHRESNRLVGNLSWRIRTPDGGFFTRSTVQKFVQDPL 296
           SGKWFITSGLNPTFDTFDCQLH+FH ES++LVGNL+WRIRT D GFFTRS VQ+FVQDP+
Sbjct: 240 SGKWFITSGLNPTFDTFDCQLHEFHTESDKLVGNLTWRIRTLDSGFFTRSAVQRFVQDPV 299

Query: 297 QPGILYNHDNEYLHYQDDWYILSSKLENSENDYIFVYYRGRNDAWDGYGGAVVYTRSAVL 356
           QPGILYNHDNE+LHYQDDWYILSSK+ENS +DY+FVYYRG+NDAWDGYGGAVVYTRSAVL
Sbjct: 300 QPGILYNHDNEFLHYQDDWYILSSKIENSNDDYVFVYYRGKNDAWDGYGGAVVYTRSAVL 359

Query: 357 PESIIPELETAAKKVGRDFNKFIITDNTCGPEPPLAERIEKTVEEGEKTIIREVEEIEGN 416
           PESIIPELE AAK VGRDFNKFI TDNTCGPEPPL ER+EKTVEEGEKTIIREVEEIEG 
Sbjct: 360 PESIIPELERAAKSVGRDFNKFIRTDNTCGPEPPLVERLEKTVEEGEKTIIREVEEIEGE 419

Query: 417 VEKVGKTEMALFQRLAEGFKELQQDEEFFVRELSKEEMDILNDLKMEAGEVEKLFGEALP 476
           VEKVGKTEM L QRLAEG KELQQDEEFF+RELSKEE DILN L+MEA EVEKLFG ALP
Sbjct: 420 VEKVGKTEMTLLQRLAEGLKELQQDEEFFLRELSKEEKDILNGLQMEATEVEKLFGGALP 479

Query: 477 LRKLR 481
           LRKLR
Sbjct: 480 LRKLR 484