Jatropha Genome Database

JcCB0007071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0007071.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30074.m001337 hypothetical protein                                    137   2e-33

>30074.m001337 hypothetical protein
          Length = 293

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/165 (50%), Positives = 100/165 (60%), Gaps = 22/165 (13%)

Query: 10  KSVIDNHLMLDNLVNKLL----TINKSIHM*GVAIF*AILGMIG**YKEEPNGQAGLCQS 65
           +S ID+ L +DN+VNK+L    T+ + +     ++              E  G     + 
Sbjct: 143 RSPIDSRLRMDNMVNKILPPMQTLKEELQCSNQSL--------------EYQGDDARKKL 188

Query: 66  *A*RSCA----DEI*TCQRE*HVVSFQVKQSIDQVRSKEKEFKPELLVMDIMTLEEEYKA 121
            A   CA    DE+   + E    + +VKQSI+QVR   KEFKPELL MD  TLEEEYKA
Sbjct: 189 MAKVDCAKAKLDEVGRMKSELATENSKVKQSIEQVRCSAKEFKPELLAMDTTTLEEEYKA 248

Query: 122 LLSDKDGEFEYLQSLQGQIGKLKGISHMIKCACGTEYKVAMEFCA 166
           LLSDK GEFEYLQSLQ QI KLKGISHMIKCACG EYKV M+ CA
Sbjct: 249 LLSDKAGEFEYLQSLQDQIDKLKGISHMIKCACGMEYKVEMDLCA 293