Jatropha Genome Database

JcCB0006821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006821.20 + phase: 0 /partial
         (272 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013886 histone deacetylase 1, 2 ,3, putative                   493   e-140
29659.m000144 histone deacetylase 1, 2 ,3, putative                   336   7e-93
29791.m000547 histone deacetylase 1, 2 ,3, putative                   279   9e-76
30174.m008716 histone deacetylase hda1, putative                       87   8e-18
30138.m003978 histone deacetylase hda1, putative                       82   2e-16
30055.m001629 Histone deacetylase, putative                            82   3e-16
29992.m001409 Histone deacetylase, putative                            74   6e-14
29794.m003331 histone deacetylase, putative                            47   9e-06

>30147.m013886 histone deacetylase 1, 2 ,3, putative
          Length = 468

 Score =  493 bits (1268), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 240/272 (88%), Positives = 249/272 (91%), Gaps = 2/272 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL
Sbjct: 182 RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 241

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           NDGMDD SFR LFRPIIQKVME+YQPDAVVLQCGADSL+GDRLGCFNLSVKGHADCLRFL
Sbjct: 242 NDGMDDVSFRALFRPIIQKVMEVYQPDAVVLQCGADSLTGDRLGCFNLSVKGHADCLRFL 301

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPLMVLGGGGYTIRNVARCWCYETA+AVGVEPDNKLPYNEYYEYFGPDYTLHI+PS
Sbjct: 302 RSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLHIDPS 361

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQXXXXXXXXXXXXXXDMDRRPKRRIWN 240
           NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ              +MDRRPKRRIW+
Sbjct: 362 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQTTPAITEVPEEGDEEMDRRPKRRIWD 421

Query: 241 GEDYESDPDEDGELRPRRLNNDSRAVAKDEMR 272
           GE YES PDED + +PRRLN+D   VAKDEMR
Sbjct: 422 GEGYES-PDEDEKPQPRRLNSDG-LVAKDEMR 451


>29659.m000144 histone deacetylase 1, 2 ,3, putative
          Length = 455

 Score =  336 bits (861), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 193/214 (90%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RVLYVDID+HHGDGVEEAFYTTDRVMTVSFHKFGD+FPGTG I+D G G+GK Y+LN+PL
Sbjct: 133 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPL 192

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFL 120
           +DG+DDES+  LF+PII KVME+++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++F+
Sbjct: 193 DDGIDDESYHFLFKPIIGKVMEVFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFM 252

Query: 121 RSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEPS 180
           RSFNVPL++LGGGGYTIRNVARCWCYET +A+G++ D+K+P +EYYEYFGPDYTLH+ PS
Sbjct: 253 RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGMDVDDKMPQHEYYEYFGPDYTLHVAPS 312

Query: 181 NMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
           NMEN NS   ++ IR+ LL+ LSKL +APS+ FQ
Sbjct: 313 NMENKNSHPLLDEIRSKLLDYLSKLQHAPSIQFQ 346


>29791.m000547 histone deacetylase 1, 2 ,3, putative
          Length = 429

 Score =  279 bits (714), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 132/215 (61%), Positives = 163/215 (75%), Gaps = 1/215 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGD-FFPGTGHIKDTGAGQGKNYALNIP 59
           RVLY+DIDVHHGDGVEEAFY TDRVMTVSFHK+GD FFPGTG +KD G  +GK YA+N+P
Sbjct: 165 RVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKYGDMFFPGTGDVKDIGEREGKFYAINVP 224

Query: 60  LNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRF 119
           L DG+DD SF  LF+ II KV+E YQP  +VLQCGADSL+ DRLGCFNLS+ GHA+C+RF
Sbjct: 225 LKDGIDDTSFTRLFKTIISKVVETYQPGVIVLQCGADSLARDRLGCFNLSIDGHAECVRF 284

Query: 120 LRSFNVPLMVLGGGGYTIRNVARCWCYETAIAVGVEPDNKLPYNEYYEYFGPDYTLHIEP 179
           ++ FN+PL+V GGGGYT  NVARCW  ET + +  E  N++P N+Y EYF P+Y+L I  
Sbjct: 285 VKKFNLPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPDNDYIEYFAPEYSLKIPG 344

Query: 180 SNMENLNSPKDMERIRNILLEQLSKLPNAPSVPFQ 214
             +EN NS   +  I+  +LE L  + +APSV  Q
Sbjct: 345 GQIENFNSKSYLSTIKMQVLENLRCIQHAPSVQLQ 379


>30174.m008716 histone deacetylase hda1, putative
          Length = 599

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 79/145 (54%), Gaps = 4/145 (2%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKF--GDFFPGTGHIKDTGAGQGKNYALNI 58
           +VL VD DVHHG+G +E F     V+ +S H+   G F+PGTG   + G+   + Y +N+
Sbjct: 357 KVLIVDWDVHHGNGTQEIFEQNKSVLYISLHRHEGGKFYPGTGAADEVGSKGAEGYCVNV 416

Query: 59  PLN-DGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCL 117
           P    G+ D  +   F+ ++  +   + PD  ++  G D+  GD LGC +++  G+A   
Sbjct: 417 PWGRGGVGDSDYIFAFQHVVLPIAAEFAPDFTIISAGFDAARGDPLGCCDVTPAGYAQMT 476

Query: 118 RFLRSF-NVPLMVLGGGGYTIRNVA 141
             L +     L+V+  GGY +R+++
Sbjct: 477 DMLYNLCGGKLLVILEGGYNLRSIS 501


>30138.m003978 histone deacetylase hda1, putative
          Length = 654

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHK--FGDFFPGT--GHIKDTGAGQGKNYAL 56
           ++L VD DVHHG+G ++ F+   RV+  S H+  FG F+P    G     G G G  Y +
Sbjct: 179 KILIVDWDVHHGNGTQKTFWKDPRVLFFSVHRHEFGSFYPANDDGFYTMIGEGPGAGYNI 238

Query: 57  NIPLNDG-MDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHAD 115
           N+P  +G   D  +  ++  I+  V + + PD +++  G D+  GD LG   ++  G++ 
Sbjct: 239 NVPWENGRCGDADYLAVWDHILIPVAKEFNPDMIIISAGFDAAVGDPLGGCRITPYGYSV 298

Query: 116 CLRFLRSFNVPLMVLG-GGGYTIRNVARCW--CYETAI 150
            L+ L  F    +VL   GGY + ++A  +  C E  +
Sbjct: 299 MLKKLMDFANGKIVLALEGGYNLESIANSFFACMEVLL 336


>30055.m001629 Histone deacetylase, putative
          Length = 382

 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 9/152 (5%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFH----KFGDFFPGTGHIKDTGAGQGKNYAL 56
           +V  +D+DVH+G+G  E FY +DRV+T+S H     +G   P  G I + G G+G  + L
Sbjct: 180 KVAVIDMDVHYGNGTAEGFYHSDRVLTISLHMNHGSWGPTHPQNGSIDELGKGEGFGFNL 239

Query: 57  NIPLNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADC 116
           NIPL +G  ++ +      ++   +  ++PD +V+  G DS + D  G   L++ G+ + 
Sbjct: 240 NIPLPNGTGNKGYDHAMTELVIPAVNKFEPDMLVMVVGQDSSTLDPNGRQCLTMDGYREI 299

Query: 117 LRFLRSF-----NVPLMVLGGGGYTIRNVARC 143
            R L +         L+++  GGY I   A C
Sbjct: 300 GRKLHALANRHSGGRLLIVQEGGYHITYSAYC 331


>29992.m001409 Histone deacetylase, putative
          Length = 425

 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 1/110 (0%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYALNIPL 60
           RV  +D DVHHG+G  +AFY    +  +S H+ G + PGTG I + G G G+   LN+PL
Sbjct: 234 RVFIIDFDVHHGNGTNDAFYDDPDIFFLSTHQDGSY-PGTGKIDEVGQGDGEGTTLNLPL 292

Query: 61  NDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSV 110
             G  D + R +F  +I    + ++PD +++  G D    D L     + 
Sbjct: 293 PGGSGDVAMRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLASLQFTT 342


>29794.m003331 histone deacetylase, putative
          Length = 342

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 14/146 (9%)

Query: 1   RVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGAGQGKNYA-LNIP 59
           RV+ +D+D H G+G E  FY  +R+  +  +      PG   +      + +NY    + 
Sbjct: 206 RVMIIDLDAHQGNGHEMDFYDDNRIYILDMYN-----PGIYPLD----YEARNYIDQKVE 256

Query: 60  LNDGMDDESFRGLFRPIIQKVMEIYQPDAVVLQCGADSLSGDRLGCFNLSVKGHA----D 115
           +  G   + +       ++   + + P+ VV   G D L GD LG   +S  G       
Sbjct: 257 IASGTRTDEYLRELDEALEVADQKFDPELVVYNAGTDILDGDPLGRLKISPDGITARDEK 316

Query: 116 CLRFLRSFNVPLMVLGGGGYTIRNVA 141
             RF R  N PL++L  G     NV 
Sbjct: 317 VFRFAREKNAPLVMLTSGPEIFLNVC 342