Jatropha Genome Database

JcCB0006421.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.30 + phase: 0 /partial
         (233 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014171 E2F4,5, putative                                        186   9e-48
28324.m000396 E2F4,5, putative                                        111   2e-25
30055.m001619 E2F4,5, putative                                        109   1e-24
29822.m003421 E2F, putative                                            53   1e-07
30147.m014015 E2F, putative                                            51   5e-07

>30170.m014171 E2F4,5, putative
          Length = 386

 Score =  186 bits (472), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 138/224 (61%), Gaps = 38/224 (16%)

Query: 12  TLNPSQCHFQLLN-PHSQNHYHNQXXXXXXXXXXXXXXXXANPAFISSFHKPQYGHPSDN 70
           T  PSQ  F+LL+ PHS   Y +                       S+ H      P  N
Sbjct: 11  TPQPSQLKFELLDQPHSHFQYQS-----------------------SNLH-----LPCSN 42

Query: 71  NKSNQLSNNIPFAFQLHAEETHSAFSKLAQLKQTNEKVNHEAQYGGQEPFAKHNKV-PNH 129
           N  N  + N+P   QL A +T SAF +LA LKQ NEK N EA+          NKV  + 
Sbjct: 43  NHFN-FNCNLPLGLQLQAADTPSAFRRLA-LKQNNEKDNQEAKVT----IPTCNKVVADR 96

Query: 130 VLDPQSATRSKRINRAKVSKNGKLGIQGSNAESPNGLNPATGCRYDSSLGLLTRKFVKLI 189
            LDPQ  T  KR +R+KV KN + G Q SNA+  NGLNPATGCRYDSSLGLLT+KFVKLI
Sbjct: 97  TLDPQCVTGGKRNSRSKVPKNVRSGSQKSNADL-NGLNPATGCRYDSSLGLLTKKFVKLI 155

Query: 190 QEDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
           QE KDGTLDLNRTADVLE VQKRRIYDITNVLEGI LIEKTSKN
Sbjct: 156 QEAKDGTLDLNRTADVLE-VQKRRIYDITNVLEGIELIEKTSKN 198


>28324.m000396 E2F4,5, putative
          Length = 451

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 73/103 (70%), Gaps = 3/103 (2%)

Query: 133 PQSATRSKRINRAKVSKNGKLGIQG--SNAESPNGLNPATGCRYDSSLGLLTRKFVKLIQ 190
           P SA   +  +++K SK  + G Q    N +SP+ L PA  CRYDSSLGLLT+KFV LI+
Sbjct: 113 PVSAKGGRTYSKSKASKGNRSGPQTLVPNIDSPSPLTPAGSCRYDSSLGLLTKKFVNLIK 172

Query: 191 EDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTSKN 233
             +DG LDLN+ A+ LE VQKRRIYDITNVLEGI LIEK  KN
Sbjct: 173 HAEDGILDLNKAAETLE-VQKRRIYDITNVLEGIGLIEKKLKN 214


>30055.m001619 E2F4,5, putative
          Length = 414

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 87/138 (63%), Gaps = 6/138 (4%)

Query: 101 LKQTNEKVNHE-AQYGGQEPFAKHNKVPNHVLD-PQSATRSKRINRAKVSKNGKLGIQ-- 156
           LK+ ++  +HE A+         + +V N  L  P S    K    +++SK+ + G Q  
Sbjct: 61  LKRKSDAADHEPAESSAWNTGPGYMEVVNSPLQTPVSGKSGKVPKTSRLSKSNRSGSQNA 120

Query: 157 GSNAESP-NGLNPATGCRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADVLEVVQKRRIY 215
           GSN  SP N L P   CRYDSSLGLLT+KF+ LI+  +DG LDLN+ AD LE VQKRRIY
Sbjct: 121 GSNIGSPGNNLTPTGPCRYDSSLGLLTKKFINLIKHAEDGILDLNKAADTLE-VQKRRIY 179

Query: 216 DITNVLEGISLIEKTSKN 233
           DITNVLEGI LIEK  KN
Sbjct: 180 DITNVLEGIGLIEKKLKN 197


>29822.m003421 E2F, putative
          Length = 328

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 172 CRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEKTS 231
           CR + SLG+L  KF++L  +D   ++ L+  A  L V ++RRIYD+ N+LE + ++ +  
Sbjct: 18  CRKEKSLGVLCTKFLRLYNKDGVESIGLDDAATKLGV-ERRRIYDVVNILESVGVVARKQ 76

Query: 232 KN 233
           KN
Sbjct: 77  KN 78


>30147.m014015 E2F, putative
          Length = 389

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 157 GSNAESPNGLNPATGC-----RYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADVL----- 206
           GS    P+G++ +T       R + SLGLLT+ FVKL    K   + L+  A +L     
Sbjct: 139 GSQNSIPSGISKSTAASRFDNRKEKSLGLLTQNFVKLFLCSKADLISLDEAAKLLLGDAH 198

Query: 207 ----EVVQKRRIYDITNVLEGISLIEKT 230
                  + RR+YDI NVL  + LIEKT
Sbjct: 199 NSSIMRTKVRRLYDIANVLSSLKLIEKT 226



 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 170 TGCRYDSSLGLLTRKFVKLIQEDKDGTLDLNRTADVLEVVQKRRIYDITNVLEGISLIEK 229
           T  R   SLGLL   F+ L  +D    + L+  A  L V ++RRIYDI NVLE + ++ +
Sbjct: 18  TYSRKQKSLGLLCTNFLSLYDKDGIEVIGLDDAASKLGV-ERRRIYDIVNVLESVGVLSR 76

Query: 230 TSKN 233
            +KN
Sbjct: 77  KAKN 80