Jatropha Genome Database

JcCB0006421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.20 + phase: 0 
         (427 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014172 translation initiation factor, putative                 669   0.0  

>30170.m014172 translation initiation factor, putative
          Length = 514

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/428 (76%), Positives = 365/428 (85%), Gaps = 14/428 (3%)

Query: 1   MSQNNLESDSLQNPRVTWEGCSVLLDINDGDRLVFSRLTPGSNLKIGNKNLSLRPLIGCP 60
           MSQNNL+SD + NPRVTWEG SVLLDINDGDRLVF+RLTPGS LKIGNKN SLRPLIGC 
Sbjct: 1   MSQNNLQSDLMPNPRVTWEGYSVLLDINDGDRLVFARLTPGSTLKIGNKNYSLRPLIGCT 60

Query: 61  FGSLFQIENGKEGPCLSRFIPSKQADLYNACYLGNNAEEKSDCEMIDESRDNRALIDNNK 120
           FGSLFQI+NG EGPCLSRF+P+ +         GNN EEK DCE+I+ES+DNRA++DNN 
Sbjct: 61  FGSLFQIDNGPEGPCLSRFVPATE---------GNNVEEKGDCEIIEESKDNRAILDNNL 111

Query: 121 AQSLTGDDIDAMRRQGAKGEEIIDALIANSATFEKKTLFSQEKYRLKKQKKYAPRVLLRR 180
           AQ+LTG+DID MRRQGAKG+EII+ALIANS TFEKKT FSQEKYR+KKQKKYAPRVLLRR
Sbjct: 112 AQTLTGEDIDEMRRQGAKGDEIIEALIANSTTFEKKTSFSQEKYRIKKQKKYAPRVLLRR 171

Query: 181 PFTRSICETYFKKYPARIGYLRIDALSLLLSMANVTANSDILVMDMVGGLLTGAVAERLG 240
           PFTRSICE YFKKYPARIG+LR+DALSLLLSMANVTANSD+LV+DMVGGLLTGA+AERLG
Sbjct: 172 PFTRSICEAYFKKYPARIGFLRVDALSLLLSMANVTANSDVLVVDMVGGLLTGAIAERLG 231

Query: 241 GTGYVCSTYLGDTPHSVDIVRMFNFNNDICKRIVRASLSDLCLAQNETSNQSCAHEDAP- 299
           GTGYVC+TYLG TP+S DIVRMFNFNND CKRIVRASL+DL    + TS    +HED P 
Sbjct: 232 GTGYVCNTYLGGTPYSTDIVRMFNFNNDACKRIVRASLNDL----SGTSKPMSSHEDGPS 287

Query: 300 MESNGQTXXXXXXXXXXXXXPEAADIDPDPTASPASKISKVHKAGERATDEALKLWKENG 359
           +E+N Q               + AD+D D TASP SK+SK  KAGERA++EALKLWKENG
Sbjct: 288 VEANDQNSSISMEEIPESSENQVADLDHDATASPISKMSKAPKAGERASEEALKLWKENG 347

Query: 360 FSSLIIAAPDLDPWSLVNEILPLLSYSAPFAIYHQYLQPLATCMHNLQLGKMAIGLQISE 419
           FSSLIIAAPDLD WSLV  +LPLLSYSAPFAI+HQYLQPLATCMHNLQLGKMAIGLQISE
Sbjct: 348 FSSLIIAAPDLDAWSLVKVLLPLLSYSAPFAIFHQYLQPLATCMHNLQLGKMAIGLQISE 407

Query: 420 PWLREYQV 427
           PWLREYQ+
Sbjct: 408 PWLREYQL 415