Jatropha Genome Database

JcCB0006421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0006421.10 - phase: 0 
         (211 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014173 nucleic acid binding protein, putative                  231   1e-61
29908.m006193 nucleic acid binding protein, putative                   83   9e-17

>30170.m014173 nucleic acid binding protein, putative
          Length = 406

 Score =  231 bits (590), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/196 (62%), Positives = 128/196 (65%), Gaps = 7/196 (3%)

Query: 1   MALLTFLPEQREKGXXXXXXXXXXXXXXXXXXXPSSWDQIKNLLTCKQVEDSSVHDPSKN 60
           MALLTFLPEQ E                     PSSWDQIKNLLTCKQ+E SSVHDPSKN
Sbjct: 1   MALLTFLPEQTEHAKQPSKRKGKQQKQKQKQ--PSSWDQIKNLLTCKQIEGSSVHDPSKN 58

Query: 61  XXXXXXXXXXXXXXX--XFRDVVHGNTRVVDRADNSPESSIVGQETGLLSRKPVXXXXXX 118
                             FRD+VHGNTRVV RADNSPESS VGQETGLLSRK        
Sbjct: 59  SNNIGYSKLGSSCSSICSFRDIVHGNTRVVHRADNSPESSTVGQETGLLSRKATGGSSTR 118

Query: 119 XXXXXXXXXXXATYTS---SSRGMQFRKLSGCYECHMIVDPSRYPTPRTTICACSHCGEV 175
                      ATY+S   SSRGMQFRKLSGCYECHMIVDPSRYP PRTTIC C+ CGEV
Sbjct: 119 TLGGSGRSNGGATYSSHVSSSRGMQFRKLSGCYECHMIVDPSRYPAPRTTICTCAQCGEV 178

Query: 176 FPKSESLELHQKVRHA 191
           FPK+ESLELHQKVRHA
Sbjct: 179 FPKTESLELHQKVRHA 194


>29908.m006193 nucleic acid binding protein, putative
          Length = 441

 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 46/59 (77%), Gaps = 4/59 (6%)

Query: 137 RGMQFRKLSGCYECHMIVDP----SRYPTPRTTICACSHCGEVFPKSESLELHQKVRHA 191
           RGM FR+ SGCYEC M+VDP    +R P+ R++IC+C  CGE+F K+E+LELHQ VRHA
Sbjct: 172 RGMPFRRFSGCYECRMVVDPVLGFTRDPSLRSSICSCPDCGEIFVKAENLELHQAVRHA 230