Jatropha Genome Database

JcCB0005881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005881.10 - phase: 0 
         (429 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27791.m000086 dihydroorotate dehydrogenase, putative                  803   0.0  
28111.m000106 dihydroorotate dehydrogenase, putative                   48   9e-06

>27791.m000086 dihydroorotate dehydrogenase, putative
          Length = 429

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/430 (89%), Positives = 407/430 (94%), Gaps = 2/430 (0%)

Query: 1   MASLSFTQIRGRHSLAEFAAVRTRQTSLTNQRLRNRIGSLRVVADAG-AKGEPDLSVTVN 59
           MASLS TQIRG++S+AE AA+ +R   L  QRL+NR+G LRV +DA   K EPDLSVTVN
Sbjct: 1   MASLSLTQIRGKNSVAELAAL-SRPCFLATQRLKNRVGVLRVASDASETKVEPDLSVTVN 59

Query: 60  GLQMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDASKVINVTPRYARLRAGAN 119
           GL+MPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDA KVINVTPRYARLRAG N
Sbjct: 60  GLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAEKVINVTPRYARLRAGVN 119

Query: 120 GSAKGQIIGWENIELISDRPLETMLSEFKRLKEEYPERILIASIMEEYDKAAWEELIDRV 179
           GSAKGQIIGWENIELISDRPLETML EFK+LKEEYPERILIASIMEEYDKAAWEELIDRV
Sbjct: 120 GSAKGQIIGWENIELISDRPLETMLKEFKQLKEEYPERILIASIMEEYDKAAWEELIDRV 179

Query: 180 EQTGIDAIEVNFSCPHGMPERKMGAAVGQDCVLLEEVCGWVNAKATVPVWAKMTPNITDI 239
           EQTGIDAIEVNFSCPHGMPERKMGAAVGQDC LLEE+CGWVNAKATVPVWAKMTPNITDI
Sbjct: 180 EQTGIDAIEVNFSCPHGMPERKMGAAVGQDCGLLEEICGWVNAKATVPVWAKMTPNITDI 239

Query: 240 TQPARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKV 299
           T+PAR AL SGCEG++AINTIMSVMGINLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKV
Sbjct: 240 TEPARAALRSGCEGISAINTIMSVMGINLKTLRPEPCVEGYSTPGGYSSKAVHPIALGKV 299

Query: 300 MNIAKMMKSEFNLEQYSLSGIGGVETGNDAAEFILLGASTVQVCTGVMMHGYGLVKKLCE 359
           MNIAKMMKSEFN++QYSLSGIGGVETG+DAAEFILLGA+TVQVCTGVMMHGYGLVKKL +
Sbjct: 300 MNIAKMMKSEFNIDQYSLSGIGGVETGSDAAEFILLGANTVQVCTGVMMHGYGLVKKLND 359

Query: 360 ELKDFMKMHNFSSIEDFRGASLDYFTTHTDLVRRQKEAIELRKAVKKGLQSDKDWTGDGF 419
           ELKDFMKMHNFSSIEDFRG SLDYFTTHTDLVRRQKEAIE RKAVK+GLQSDKDWTGDGF
Sbjct: 360 ELKDFMKMHNFSSIEDFRGVSLDYFTTHTDLVRRQKEAIEQRKAVKRGLQSDKDWTGDGF 419

Query: 420 VKETESMVSN 429
           VKE+ESMVSN
Sbjct: 420 VKESESMVSN 429


>28111.m000106 dihydroorotate dehydrogenase, putative
          Length = 454

 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 16/159 (10%)

Query: 227 PVWAKMTPNIT--DITQPARVALSSGCEGVAAINTIMSVMGINLKTLRPEPCVEGYSTPG 284
           P+  K+ P+++  D+   A VAL+   +G+   NT +S   +    +R  P  E     G
Sbjct: 309 PLLVKIAPDLSKEDLEDIAAVALALRLDGLIITNTTISRPDL----VRKYPVAE---ESG 361

Query: 285 GYSSKAVHPIALGKVMNIAKMMKSEFNLEQYSLSGIGGVETGNDAAEFILLGASTVQVCT 344
           G S K +  ++   +  +  + + +       L G GG+ +G DA   I  GA+ VQ+ T
Sbjct: 362 GLSGKPLFDLSTDILKEMYILTRGKI-----PLIGCGGISSGEDAYRKIRAGATLVQIYT 416

Query: 345 GVMMHGYGLVKKLCEELKDFMKMHNFSSIEDFRGASLDY 383
                G  L+ ++  EL + ++   F SI +  GA  DY
Sbjct: 417 AFAYGGPALIPQIKTELAECLERDGFKSILEAVGA--DY 453