Jatropha Genome Database

JcCB0005461.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0005461.10 - phase: 0 /pseudo/partial
         (496 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30008.m000793 ATP binding protein, putative                           708   0.0  

>30008.m000793 ATP binding protein, putative
          Length = 937

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/490 (72%), Positives = 384/490 (78%), Gaps = 42/490 (8%)

Query: 1   MYWLVARNVVFALPKWRSLTLFLRSPAC-KYSSFSRSPSLLIAIAGLEFNCMILVIKSRR 59
           MYWL  RN V +LPKWRS TLFLRSPA  K+ SFSRSP LL                   
Sbjct: 1   MYWLATRNAVVSLPKWRSFTLFLRSPAATKFISFSRSPLLL-----------------NS 43

Query: 60  KDVERVCCLKEQKNLKGNARVTKKSKASNNVLDDKDLSHIIWWKERLQQCRKPSTIQLVK 119
           ++VER+ CLK+ K LKG  R +KK KASNN+L DKDLSHIIWWKERL QCRKPST+QLVK
Sbjct: 44  RNVERINCLKDGKILKGVTRGSKKLKASNNILGDKDLSHIIWWKERLHQCRKPSTVQLVK 103

Query: 120 RLMYSNLLGLDVNLKNGSLKEGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACFLVE 179
           RLMYSNLLGL+V LKNGSLK+GNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDAC LVE
Sbjct: 104 RLMYSNLLGLNVELKNGSLKDGNLNWEMLQFKSKFPREVLLCRVGDFYEAIGIDACILVE 163

Query: 180 YAGLNPFGGLRSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKSRFIS 239
           YAGLNPFGGLR+DS+PRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRK RFIS
Sbjct: 164 YAGLNPFGGLRTDSVPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKGRFIS 223

Query: 240 GHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCIVSVLEAMKTYSLEDGLTEEA 299
           GHAHPG+PYVFGL GVDHDLDFPEPMPVVGISRSA GYCIVSVLE MKTYS EDGLTEEA
Sbjct: 224 GHAHPGNPYVFGLAGVDHDLDFPEPMPVVGISRSASGYCIVSVLETMKTYSSEDGLTEEA 283

Query: 300 LVAKLRTCRYHHLFLHTSLRNNSSGTCRXXXXXXXXXXXXXCSTRHFEWFQGNPVTELLF 359
           LV KLRTCRYHHLFLH SLR+NSSGTCR             C+ RHFEWF+G+P TELLF
Sbjct: 284 LVTKLRTCRYHHLFLHASLRHNSSGTCRWGEFGEGGLLWGECNARHFEWFEGDPFTELLF 343

Query: 360 KVRELYGLENGVAFRNVTVPSENRPHSLHLGTATQIGQFNFTXTVXIEFFMXCQPILXQV 419
           KVRELYGL++G+ FRNVTVPS+NRP  LHLGTATQIG                 P L +V
Sbjct: 344 KVRELYGLDDGITFRNVTVPSDNRPRPLHLGTATQIGAIPTE----------GIPCLLKV 393

Query: 420 FHTLRCHTNRRNTLFIEGIASIKLLRYVRDLLLNPPAYEIASTIQAICKLMSNVTCSIPE 479
                C           G+  +    YVRDLLLNPPAYEIASTIQA CKLMS++TCSIPE
Sbjct: 394 LLPSNC----------TGLPVL----YVRDLLLNPPAYEIASTIQATCKLMSSITCSIPE 439

Query: 480 FTCVSSAKVV 489
           FTC+SSAK+V
Sbjct: 440 FTCISSAKLV 449