Jatropha Genome Database
- JcCB0005311.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0005311.20 - phase: 0 /partial
(261 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29815.m000491 ubiquitin-protein ligase, putative 395 e-111
29889.m003352 ubiquitin-protein ligase, putative 168 3e-42
29629.m001405 E3 ubiquitin protein ligase upl2, putative 129 2e-30
29596.m000712 E3 ubiquitin protein ligase upl2, putative 127 4e-30
29206.m000140 conserved hypothetical protein 84 7e-17
29805.m001489 ubiquitin protein ligase E3a, putative 69 2e-12
29602.m000214 hect ubiquitin-protein ligase, putative 67 1e-11
>29815.m000491 ubiquitin-protein ligase, putative
Length = 1148
Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust.
Identities = 181/200 (90%), Positives = 193/200 (96%)
Query: 1 HYDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILP 60
HYDGD KDL LDFT+TEESFGKRHV ELKPGGK+V VTNENKMQY+HAMADYKLNRQIL
Sbjct: 949 HYDGDLKDLFLDFTITEESFGKRHVIELKPGGKNVSVTNENKMQYIHAMADYKLNRQILA 1008
Query: 61 FSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIK 120
FSNAFYRGLTD+ISPSWLKLFNA EFNQLLSGGDFDIDVDDLR+NTRYTGGYSEGSRTIK
Sbjct: 1009 FSNAFYRGLTDIISPSWLKLFNASEFNQLLSGGDFDIDVDDLRDNTRYTGGYSEGSRTIK 1068
Query: 121 LFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVD 180
LFWEVI+GF+PNERC+LLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDV+
Sbjct: 1069 LFWEVIKGFEPNERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVE 1128
Query: 181 RLPSASTCYNTLKVFLMQGT 200
RLPSASTCYNTLKV ++QG+
Sbjct: 1129 RLPSASTCYNTLKVLVIQGS 1148
>29889.m003352 ubiquitin-protein ligase, putative
Length = 1067
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/194 (42%), Positives = 120/194 (61%), Gaps = 6/194 (3%)
Query: 1 HYDGDFKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILP 60
HY GD +L L F + +G++ EL PGG+++ V+NEN + ++H +++++LN QI
Sbjct: 821 HYQGDISNLELYFVIVNNEYGEQTEEELLPGGRNLRVSNENVITFIHLVSNHRLNFQIRQ 880
Query: 61 FSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIK 120
S+ F RG +I W+ +FN E L+SG +DVDDLR++T Y GGY I+
Sbjct: 881 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLESLDVDDLRHHTHYAGGYHSEHYVIE 940
Query: 121 LFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQDVD 180
+FWEV++ F + LKFVT CSR PLLGFK+L+P F I + A AS A +D
Sbjct: 941 IFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRAAGSASEEA------LD 994
Query: 181 RLPSASTCYNTLKV 194
RLP+++TC N LK+
Sbjct: 995 RLPTSATCMNLLKL 1008
>29629.m001405 E3 ubiquitin protein ligase upl2, putative
Length = 3691
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 107/200 (53%), Gaps = 23/200 (11%)
Query: 5 DFKDLSLDFTVTEES---FGKRHV--FELKPGGKDVCVTNENKMQYVHAMADYKLNRQIL 59
D DL+ EE + K V FELKPGG+++ VT E K +YV +AD+ L I
Sbjct: 3478 DIPDLTFSMDADEEKHILYEKTEVTDFELKPGGRNIRVTEETKHEYVDLVADHILTNAIR 3537
Query: 60 PFSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTI 119
P N+F G +++ + +FN E L+SG +ID+DDL+ NT YT GY+ S +
Sbjct: 3538 PQINSFLEGFNELVPRELISIFNDKELELLISGLP-EIDLDDLKANTEYT-GYTAASTVV 3595
Query: 120 KLFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDASLWATI 174
+ FWEV++GF + LL+FVT S+ PL GFK LQ F IHK
Sbjct: 3596 QWFWEVVKGFNKEDMARLLQFVTGTSKVPLEGFKALQGISGPQRFQIHKAYGAP------ 3649
Query: 175 GGQDVDRLPSASTCYNTLKV 194
+RLPSA TC+N L +
Sbjct: 3650 -----ERLPSAHTCFNQLDL 3664
>29596.m000712 E3 ubiquitin protein ligase upl2, putative
Length = 3666
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 105/198 (53%), Gaps = 23/198 (11%)
Query: 5 DFKDLSLDFTVTEES---FGKRHV--FELKPGGKDVCVTNENKMQYVHAMADYKLNRQIL 59
D DL+ EE + + V EL PGG+++ VT ENK QYV +A+++L I
Sbjct: 3453 DVLDLTFSIDADEEKLILYERTEVTDHELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIR 3512
Query: 60 PFSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTI 119
P NAF G ++I + +FN E L+SG DID+DD+R NT Y+ GYS S I
Sbjct: 3513 PQINAFMEGFNELILRDLISIFNDKELELLISGLP-DIDLDDMRANTEYS-GYSAASPVI 3570
Query: 120 KLFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQ-----PSFTIHKVACDASLWATI 174
+ FWEV++GF ++ LL+FVT S+ PL GF LQ F IHK
Sbjct: 3571 QWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSP------ 3624
Query: 175 GGQDVDRLPSASTCYNTL 192
D LPSA TC+N L
Sbjct: 3625 -----DHLPSAHTCFNQL 3637
>29206.m000140 conserved hypothetical protein
Length = 875
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 3 DGDFKD---LSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQIL 59
D +F D L L F E G R + EL P GK + VT++N+ +YV+ + ++ I
Sbjct: 693 DANFIDSDALGLTFVREVEELGSRRIVELCPDGKSISVTSKNREEYVNLLIRHRFVISIS 752
Query: 60 PFSNAFYRGLTDVISPSWLK--LFNAMEFNQL---LSGGDFDIDVDDLRNNTRYTGGYSE 114
+ F RG D+ + S L+ F ++E L L G + I ++D + +T Y GY E
Sbjct: 753 DQVSRFARGFADICN-SGLQTFFFQSLELEDLDWMLYGSESAISIEDWKAHTEY-NGYKE 810
Query: 115 GSRTIKLFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATI 174
I FW+++ +R +LL F TS P+ GF+ L I+K
Sbjct: 811 TDPQISWFWKIVGEMSAEQRKVLLFFWTSVKYLPIEGFRGLASRLYIYK----------- 859
Query: 175 GGQDVDRLPSASTCY 189
+ DRLPS+ TC+
Sbjct: 860 SPEPHDRLPSSHTCF 874
>29805.m001489 ubiquitin protein ligase E3a, putative
Length = 1561
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 101/265 (38%), Gaps = 73/265 (27%)
Query: 6 FKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKM-------QYVHAMADYKLNRQI 58
+DL LDFT+ PG D + + KM +Y+ + D +N I
Sbjct: 1361 IEDLFLDFTL--------------PGYPDYILHQDCKMVNMDNLEEYISLVVDATINAGI 1406
Query: 59 LPFSNAFYRGLTDVISPSWLKLFNAMEFNQLLSGG-DFDIDVDDLRNNTRYTGGYSEGSR 117
AF G V L++F E +LL G DF + ++L ++ ++ GY+ S
Sbjct: 1407 SRQVEAFKSGFNQVFPIKHLQVFTVEELERLLCGEHDFWV-YNELFDHIKFDHGYTASSP 1465
Query: 118 TIKLFWEVIRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDASLWATIGGQ 177
I E+++GF E+ L+FVT R P G L P TI + C +
Sbjct: 1466 PITNLLEIMQGFNQEEQRAFLQFVTGAPRLPPGGLASLNPKLTIVRKHCSNRV------- 1518
Query: 178 DVDRLPSASTCYNTLKVFLMQGTMTPRIFSLRFQSILFIFHLTLDVPVLYSCLGWLQLPT 237
D D LPS TC N +L+LP
Sbjct: 1519 DAD-LPSVMTCAN-----------------------------------------YLKLPP 1536
Query: 238 YKRASTLRAKLLYAISSNTG-FELS 261
Y ++ KLLYAI+ G F LS
Sbjct: 1537 YSSKEKMKEKLLYAITEGQGSFHLS 1561
>29602.m000214 hect ubiquitin-protein ligase, putative
Length = 1899
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 13/195 (6%)
Query: 6 FKDLSLDFTVTEESFGKRHVFELKPGGKDVCVTNENKMQYVHAMADYKLNRQILPFSNAF 65
+DL LDFT+ + LKPG D V N +Y+ + D + I+ AF
Sbjct: 1685 IEDLCLDFTLP-----GYPDYILKPG--DETVDRNNLDEYISLVVDATVKSGIMRQMEAF 1737
Query: 66 YRGLTDVISPSWLKLFNAMEFNQLLSGGDFDIDVDDLRNNTRYTGGYSEGSRTIKLFWEV 125
G V S L++F+ E + LL G + + L ++ ++ GY+ S I E+
Sbjct: 1738 RAGFNQVFDISSLQIFSPQELDYLLCGRRELWEPETLVDHIKFDHGYTAKSPAIINLLEI 1797
Query: 126 IRGFQPNERCLLLKFVTSCSRAPLLGFKHLQPSFTI-HKVACDASLWATIGGQDV----- 179
+ F P ++ +FVT R P G L P TI K + A A G
Sbjct: 1798 MGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSSAGNAAATNGTGPSESAD 1857
Query: 180 DRLPSASTCYNTLKV 194
D LPS TC N LK+
Sbjct: 1858 DDLPSVMTCANYLKL 1872