Jatropha Genome Database

JcCB0004891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.20 + phase: 0 
         (244 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006255 DNA binding protein, putative                           213   7e-56
30180.m001071 DNA binding protein, putative                            96   2e-20
29738.m001043 DNA binding protein, putative                            88   3e-18
29646.m001078 conserved hypothetical protein                           79   2e-15
29900.m001610 DNA binding protein, putative                            72   2e-13
29814.m000735 hypothetical protein                                     70   8e-13
27749.m000334 conserved hypothetical protein                           62   2e-10

>29908.m006255 DNA binding protein, putative
          Length = 246

 Score =  213 bits (541), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 138/244 (56%), Positives = 160/244 (65%), Gaps = 18/244 (7%)

Query: 1   MLPFQTYYGFD-HSQNRFVQEPTLVNVMEMDGAGESVLSSSSRLEKKSTEACKSHKEAER 59
           MLP     G D ++QN +++EP LVNVM  D     + SSSSR EKKST+ CKSHKEAER
Sbjct: 1   MLPAA---GLDNYNQNVYLREPCLVNVM--DAGESILSSSSSRSEKKSTDPCKSHKEAER 55

Query: 60  RRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQA-AHVARQDRDSCCGSES 118
           RRRQRINAH              DKASLLAEVVHHVKELRKQA + VAR       G E+
Sbjct: 56  RRRQRINAHLSTLRTLLPSTTKTDKASLLAEVVHHVKELRKQATSQVARG------GGET 109

Query: 119 E--SEKYWPFPGESDETILSYCDG-ETKTMRVSVCCEDRPGLNRDLSQAIRSVKARAVKA 175
           E   ++YWPFPGESDE  LSYCDG E+KTMRVSVCC+DRPGLN++L+ AIRSV ARAV+A
Sbjct: 110 ELPDQQYWPFPGESDEASLSYCDGPESKTMRVSVCCDDRPGLNQELADAIRSVHARAVRA 169

Query: 176 EMMTVGGRTRXXXXXX-XXXXXXXXXXXXXXXXRRALKAVVENR-VSRSGLGQVVQRNKR 233
           EMMTVGGRT+                       RRA+K+VVENR    SG G +   NKR
Sbjct: 170 EMMTVGGRTKSVVVVQWGTGGGGRGGEEDVGVLRRAIKSVVENRGAGSSGPGLLAHGNKR 229

Query: 234 LRGY 237
           +R Y
Sbjct: 230 VRDY 233


>30180.m001071 DNA binding protein, putative
          Length = 237

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 18/145 (12%)

Query: 44  EKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAA 103
           + ++  A K+HKEAE+RRR+RIN+H              DKASLLA+VV  V+EL++Q +
Sbjct: 59  QDRALAALKNHKEAEKRRRERINSHLDKLRGLLPCNSKTDKASLLAKVVQRVRELKQQTS 118

Query: 104 HVARQDRDSCCGSESESEKYWPFPGESDE-TILS--YCDGETKTMRVSVCCEDRPGLNRD 160
            +   D                FP E+DE T+LS  Y        + S+CCEDR  L  D
Sbjct: 119 QIPGLDS---------------FPSETDEITVLSGEYSSDGQLIFKASLCCEDRSDLLPD 163

Query: 161 LSQAIRSVKARAVKAEMMTVGGRTR 185
           L + ++S+  + +KAEM+T+GGR R
Sbjct: 164 LIEILKSLHLKTLKAEMVTLGGRIR 188


>29738.m001043 DNA binding protein, putative
          Length = 367

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/144 (38%), Positives = 80/144 (55%), Gaps = 16/144 (11%)

Query: 43  LEKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQA 102
           ++ K+  A KSH EAERRRR+RIN H              DKASLLAEV+ HVKEL++Q 
Sbjct: 164 MDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQT 223

Query: 103 AHVARQDRDSCCGSESESEKYWPFPGESDETILSYCDGETK-TMRVSVCCEDRPGLNRDL 161
           + +A                  P P E DE  +   D + K  ++ S+CCEDR  L  DL
Sbjct: 224 SLIAETS---------------PVPTEIDELTVDASDEDGKFIIKASLCCEDRSDLLPDL 268

Query: 162 SQAIRSVKARAVKAEMMTVGGRTR 185
            + +++++ R +KAE+ T+GGR +
Sbjct: 269 IKTLKALRLRTLKAEITTLGGRVK 292


>29646.m001078 conserved hypothetical protein
          Length = 265

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 19/145 (13%)

Query: 45  KKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAAH 104
           ++ST+A ++H EAER+RR RINAH              DKASLLAEV+ ++KEL+  AA 
Sbjct: 65  ERSTQALRNHCEAERKRRARINAHLDTLRSLVPGAKKMDKASLLAEVIKYMKELKMTAAG 124

Query: 105 VARQDRDSCCGSESESEKYWPFPGESDETIL----SYCDGETKTMRVSVCCEDRPGLNRD 160
           V+               +    P + DE  +       DG    +R+S+CC+ +PGL  D
Sbjct: 125 VS---------------EGLLMPMDVDEVRVEGQDDKVDGAPCMIRISLCCDYKPGLLSD 169

Query: 161 LSQAIRSVKARAVKAEMMTVGGRTR 185
           L +A+ ++    +++E+ T+ GR +
Sbjct: 170 LRRALDALHLIVMRSEIATLEGRMK 194


>29900.m001610 DNA binding protein, putative
          Length = 227

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 76/146 (52%), Gaps = 19/146 (13%)

Query: 44  EKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAA 103
           E K+  A KSH EAERRRR+RINAH              DKA+LLAEV+  VKELRK A 
Sbjct: 30  EAKALAALKSHSEAERRRRERINAHLATLRGLVPCTEKMDKATLLAEVISQVKELRKNAI 89

Query: 104 HVARQDRDSCCGSESESEKYWPFPGESDET-ILSYCDGE---TKTMRVSVCCEDRPGLNR 159
                          E+ K    P   DE  + +Y +G    T   + S+CC+ RP L  
Sbjct: 90  ---------------EASKGLLIPMPDDEVKVEAYDNGLGDGTLYFKASLCCDYRPELLS 134

Query: 160 DLSQAIRSVKARAVKAEMMTVGGRTR 185
           D+ QAI +++ + + AE+ T+G R +
Sbjct: 135 DIKQAIDALQMKLLDAEISTLGVRLK 160


>29814.m000735 hypothetical protein
          Length = 288

 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 32/159 (20%)

Query: 44  EKKSTEACKSHKEAERRRRQRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAA 103
           E K+    KSH +AE+RRR RIN                DKA+LL   +  VK+L+ +A 
Sbjct: 78  ENKAASVSKSHSQAEKRRRDRINTQLGILRKLIPKSEKMDKAALLGSAIDQVKDLKGKAM 137

Query: 104 HVARQDRDSCCGSESESEKYWPFPGESDE-----------------TILSYCDGETKTMR 146
            V+               K    P E DE                 T  ++ D +   +R
Sbjct: 138 EVS---------------KTITIPTEFDEVTVDIDDSNDVFQHLSTTSTAHKDKDNIFIR 182

Query: 147 VSVCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVGGRTR 185
           VSVCC+DRP +  +L + ++ ++   V+A++ +VGGR +
Sbjct: 183 VSVCCDDRPEVFSELIRVLKGLRLSIVRADISSVGGRVK 221


>27749.m000334 conserved hypothetical protein
          Length = 246

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 10/183 (5%)

Query: 3   PFQTYYGFDHSQNRFVQEPTLVNVMEMDGAGESVLSSSSRLEKKSTEACKSHKEAERRRR 62
           P  T Y       +     +  N M+       + +S  + E K   A K HKEAER+RR
Sbjct: 34  PISTCYSSGSYSKKINVHSSAANFMDEVNYKNLLATSIPKEEAKLMSALK-HKEAERKRR 92

Query: 63  QRINAHXXXXXXXXXXXXXXDKASLLAEVVHHVKELRKQAAHVARQDRDSCCGSESESEK 122
            RIN                 KAS+LAE +  +K+L    + +         G  S    
Sbjct: 93  VRINGQFAELRTVLPNLIKRKKASVLAETIKCLKDLVNTLSEL---KEIYGVGRLSSV-- 147

Query: 123 YWPFPGESDETILSYCDGE-TKTMRVSVCCEDRPGLNRDLSQAIRSVKARAVKAEMMTVG 181
              F G +D   + Y  G+  K ++V + CED+  L  D+++A+RSVK + VKAE+  + 
Sbjct: 148 ---FSGGTDMLRVEYSPGQGLKLVKVMLSCEDKRKLMFDIARAVRSVKGKLVKAEISIMC 204

Query: 182 GRT 184
           G T
Sbjct: 205 GWT 207