Jatropha Genome Database

JcCB0004891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004891.10 + phase: 0 
         (215 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006256 conserved hypothetical protein                          206   7e-54
30078.m002242 conserved hypothetical protein                           67   5e-12

>29908.m006256 conserved hypothetical protein
          Length = 216

 Score =  206 bits (524), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 122/218 (55%), Positives = 151/218 (69%), Gaps = 11/218 (5%)

Query: 1   MEGKSCTSSKNHNSGDAE-ESNAIMQLEGEPMLGDITWVKLHGDSWWPAVVFGSNV---- 55
           MEGK CTSS+ H++ D + +  A   L+ EP +GD+ W+KL    WWPAVV G+N     
Sbjct: 1   MEGKICTSSQTHDNHDDDVKEVAAENLDKEPSIGDVIWIKLPRSLWWPAVVVGNNFDKGN 60

Query: 56  -SGDREIKGVRVRLIGSYEYMYVDPIKCRSEFHITLEKNNGSYEEIFRKALEQDISQSNS 114
            SGDR    VRVRL GSY+YM VDP K   EF I L++NNG Y+EIFRK+LEQD S S S
Sbjct: 61  KSGDRLTGNVRVRLYGSYKYMSVDPFKWHFEFQIILKQNNGCYQEIFRKSLEQDQSGSKS 120

Query: 115 SRVKGKVTKSKEGEKAISKASKQDGVKRKLKLDSLNPEKNTKRKTSNRDGMQKKLKQKSS 174
            +VK KV+KSK+ EK      +  G+KRKLKL S N +KN+KRK+S +D   KK K  + 
Sbjct: 121 GQVKRKVSKSKDIEKP-----EHHGIKRKLKLGSPNTKKNSKRKSSKQDDTPKKNKLNTP 175

Query: 175 STDAASPGRSQELSARRTKVMQTLGLIAPSGSPFHQKD 212
           ++D A  GRSQELSARRTKVMQ+LGLIAPSGSPF + D
Sbjct: 176 TSDKALSGRSQELSARRTKVMQSLGLIAPSGSPFRKID 213


>30078.m002242 conserved hypothetical protein
          Length = 260

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 17/195 (8%)

Query: 19  ESNAIMQLEGEPMLGDITWVKLHGDSWWPAVVFG--SNVSGDRE--IKG-VRVRLIGSYE 73
           ESN I    G     ++ W K     WWPA V G  S++S  R   I G V V+  G + 
Sbjct: 78  ESNGICATPG-----NVVWAKTDQQMWWPAEVIGETSSISDSRSQGIDGHVLVQFYGDHG 132

Query: 74  YMYVDPIKCRSEFHITLEKNNGSYEEIFRKALEQDISQSNSSRVKGKVTKSKEGEKAISK 133
             +VDP +  S+     E+ + +  + F+ AL++ + +       G++    +G K   +
Sbjct: 133 TAWVDPARDISQLEYCFEERSCNTTDKFQDALKKALERKEDISSHGQLLGCSDGSKQTCQ 192

Query: 134 ASKQDGVKRKLKLDSLNPEKNTKRKTSNRDGMQKKLKQKSSSTDAASPGRSQELSARRTK 193
            ++  G KR   + S        R+ S R     K K K    + A P  +     RR +
Sbjct: 193 QNQSSG-KRTSSISSRTESDYIGRRKSKR-----KEKFKICYDEVAFPPTAAR-KVRRFR 245

Query: 194 VMQTLGLIAPSGSPF 208
           +M+ LGLIAP+GSPF
Sbjct: 246 MMRYLGLIAPTGSPF 260