Jatropha Genome Database
- JcCB0004861.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0004861.10 - phase: 0 /pseudo
(337 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m013877 alpha-amylase, putative 201 3e-52
30170.m013878 pentatricopeptide repeat-containing protein, putative 196 1e-50
29630.m000833 alpha-amylase, putative 110 7e-25
29736.m002033 alpha-amylase, putative 103 1e-22
30170.m014309 alpha-amylase, putative 79 2e-15
>30170.m013877 alpha-amylase, putative
Length = 422
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/198 (53%), Positives = 114/198 (57%), Gaps = 46/198 (23%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
GFNWES EGGWYN L N VP++AS+GITHVWLPP S SV+ +
Sbjct: 25 GFNWESCNKEGGWYNSLKNFVPDIASAGITHVWLPPSSQSVAPQGYMPGRLYDLSVSKYG 84
Query: 45 ------------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICS 74
EKQD RGIW IFEGGT DRLDWGPSFIC
Sbjct: 85 NQDELKSLIQALHQKGIKCLADIVINHRTAEKQDERGIWCIFEGGTADDRLDWGPSFICR 144
Query: 75 DDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIF 134
DDT YSDGKGNPDTG DF PAPDIDH+NPRVQ+ LSDWM WLK EIGFDGWRFD+ +
Sbjct: 145 DDTAYSDGKGNPDTGGDFEPAPDIDHLNPRVQQELSDWMNWLKSEIGFDGWRFDYVKGYA 204
Query: 135 TCFYKDINDKQKAKFCSG 152
K K F G
Sbjct: 205 PSITKIYMGKTTPDFAVG 222
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTS- 326
LKE I +L +R I S ++ +A+++D YMAAI++ +I K+GP D GNL+P
Sbjct: 347 LKEPISRLASIRKSYGIDSKSRVKIVAAESDLYMAAINDNVIMKIGPKMDLGNLLPSKEF 406
Query: 327 QIAASGIDYTV 337
Q+A SG Y V
Sbjct: 407 QVATSGESYAV 417
>30170.m013878 pentatricopeptide repeat-containing protein, putative
Length = 1113
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 110/177 (62%), Gaps = 46/177 (25%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
GFNWES GGWYN L NS+ ++A++GITHVWLPPPS SVS +
Sbjct: 31 GFNWESCNKGGGWYNLLKNSILDIANAGITHVWLPPPSQSVSPQGYMPGRLYDLNASRYG 90
Query: 45 ------------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICS 74
EK+D RGIW IFEGGT DRLDWGPSFIC
Sbjct: 91 TQDELKSLIRAFHHKGIKCLADIVINHRTAEKKDERGIWCIFEGGTDDDRLDWGPSFICC 150
Query: 75 DDTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFAR 131
DDT++SDG GNPDTG D+ PAPDIDH+NPRVQ+ LSDWM WLK EIGF GWRFDFA+
Sbjct: 151 DDTVFSDGTGNPDTGEDYPPAPDIDHLNPRVQKELSDWMNWLKLEIGFGGWRFDFAK 207
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 268 LKEEILKLIEVRTRNQIRPNSILRTLASDADHYMAAIDEKIIAKVGPNDDKGNLVPPTS- 326
LKE+I KL +R I S ++ LA+++D YMAAI++ +I K+GP D GNL+P
Sbjct: 353 LKEQISKLASIRKNYGIDSRSGMKILAAESDLYMAAINDNVIMKIGPRMDLGNLLPSKEF 412
Query: 327 QIAASGIDYTV 337
Q+A SG Y V
Sbjct: 413 QVATSGESYAV 423
>29630.m000833 alpha-amylase, putative
Length = 972
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 91/197 (46%), Gaps = 53/197 (26%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
GFNWESW+ + WY L+ + +L+ G+T VWLPPP+ SV+ +
Sbjct: 583 GFNWESWRRQ--WYVELATKMADLSQCGVTAVWLPPPTESVAPQGYMPSDLYNLNSAYGT 640
Query: 45 -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
+KQ G+W+IF G +L WGP I D
Sbjct: 641 EEELKYCIEEMHSHDILALGDVVLNHRCAQKQSPNGVWNIF-----GGKLAWGPEAIVCD 695
Query: 76 DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
D + G GNP +G F+ AP+IDH V+R + +W+ WL++ IGFDGWR DF R
Sbjct: 696 DPNFQ-GCGNPSSGDIFHAAPNIDHSQDFVRRDIKEWLNWLRNHIGFDGWRLDFVRGFSG 754
Query: 136 CFYKDINDKQKAKFCSG 152
+ K+ + F G
Sbjct: 755 TYVKEYIETSNPAFAIG 771
>29736.m002033 alpha-amylase, putative
Length = 900
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 52/197 (26%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
GFNWES K+ G W+ L E++S G T +WLPPP+ SVS E
Sbjct: 515 GFNWESNKS-GRWHMELKEKAAEISSLGFTVIWLPPPTESVSPEGYMPKDLYNLNSRYGS 573
Query: 45 -----------------------------EKQDNRGIWSIFEGGTPGDRLDWGPSFICSD 75
Q+ G+W+IF G RL+W I +D
Sbjct: 574 IDELKDLVKSLHRVGLKVLGDAVLNHRCAHFQNQNGVWNIF-----GGRLNWDDRAIVAD 628
Query: 76 DTLYSDGKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFT 135
D + G+G+ +G +F+ AP+IDH V++ L +W+ WL+DEIG++GWR DF R +
Sbjct: 629 DPHFQ-GRGSKSSGDNFHAAPNIDHSQDFVRQDLKEWLCWLRDEIGYNGWRLDFVRGFWG 687
Query: 136 CFYKDINDKQKAKFCSG 152
+ KD + + F G
Sbjct: 688 GYVKDYMEATEPYFAVG 704
>30170.m014309 alpha-amylase, putative
Length = 398
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 87/191 (45%), Gaps = 43/191 (22%)
Query: 1 GFNWESWKTEGGWYNFLSNSVPELASSGITHVWLPPPSHSVSAE---------------- 44
FNWES K + W+ L VP++A SG T WLPPPS S+S E
Sbjct: 16 AFNWESHKHD--WWRNLERKVPDIAKSGFTSAWLPPPSQSLSPEGYLPQNLYSLNSVYGS 73
Query: 45 --------EKQDNRGIWSIFE-------GGTPG-----DRLDWGPSFICSDD---TLYSD 81
+K + ++ + G T G +R D P I D+ TL +
Sbjct: 74 EHLLKALLQKMKQYNVRAMADIVINHRIGTTKGHGGMYNRYDGIP--IPWDERAVTLCTG 131
Query: 82 GKGNPDTGADFNPAPDIDHVNPRVQRVLSDWMIWLKDEIGFDGWRFDFARRIFTCFYKDI 141
G GN TG +FN P+IDH V++ + W+ WL++ +GF +RFDFAR + K+
Sbjct: 132 GLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLKWLRNVVGFQDFRFDFARGYSAKYVKEY 191
Query: 142 NDKQKAKFCSG 152
+ K F G
Sbjct: 192 IEAAKPIFSIG 202