Jatropha Genome Database

JcCB0004801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004801.10 - phase: 0 
         (209 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m006862 conserved hypothetical protein                          100   6e-22

>30131.m006862 conserved hypothetical protein
          Length = 216

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/207 (38%), Positives = 100/207 (48%), Gaps = 10/207 (4%)

Query: 1   MADPILHKQEGSIPETENGDEATLTSKRKLDSLSIPQAKEVVEE-DRPKKSQKLQSLTEN 59
           M+D ILH++E  +PET + D+ TL SKRKLDSL + Q KE  EE ++P K+QK  SL +N
Sbjct: 1   MSDSILHEEEVPMPETISKDDTTLPSKRKLDSLPVSQIKEKAEETNQPNKTQKSHSLNDN 60

Query: 60  GNSPVHEEKSAANGPLLYSANNSGSNS---EEKNTSEAKXXXXXXXXXXXXXXXXXXXXX 116
           GN    EEKS  N  L  S+N+  SN    EEK  ++                       
Sbjct: 61  GN----EEKSRENKLLESSSNDIASNFSIPEEKPENDVLLVEEEEDDVDYADEDDDDDDD 116

Query: 117 XXXXXXXXXXXXXXGQ-VDRKGKGIMIEKXXXXXXXXXXXXXXX-XXXXXXXXXXXPLAE 174
                            VDRKGKGIMIE+                           PLAE
Sbjct: 117 DDEEEEEEEEEEEENPVVDRKGKGIMIEEEDDDDDDDDDASEMDGGDDDDVELEDDPLAE 176

Query: 175 VDLDNILPSRTRRRAAQPGVYIANDLG 201
           VDLDNILPSRTRR+   PG++I  +LG
Sbjct: 177 VDLDNILPSRTRRKTKHPGIFIGKNLG 203