Jatropha Genome Database

JcCB0004761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004761.10 + phase: 0 
         (97 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30167.m000867 DNA binding protein, putative                           114   1e-26
30190.m010906 transcription factor, putative                           97   2e-21
30170.m014046 DNA binding protein, putative                            95   5e-21
30190.m010902 DNA binding protein, putative                            91   9e-20
30170.m014056 DNA binding protein, putative                            89   6e-19
29681.m001296 DNA binding protein, putative                            72   6e-14
30131.m007263 DNA binding protein, putative                            69   4e-13
29610.m000410 DNA binding protein, putative                            65   6e-12
28288.m000014 DNA binding protein, putative                            63   2e-11
30055.m001589 DNA binding protein, putative                            61   1e-10
30155.m001616 DNA binding protein, putative                            56   3e-09
30174.m008717 DNA binding protein, putative                            54   2e-08
30076.m004565 conserved hypothetical protein                           50   2e-07

>30167.m000867 DNA binding protein, putative
          Length = 81

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 52/68 (76%), Positives = 63/68 (92%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
          +SNWTA+Q+KLFE ALA+YDKDTPDRWR IAKIVG T EEEVK++++ILVNDIN+IE DK
Sbjct: 6  SSNWTAEQNKLFEDALAIYDKDTPDRWRTIAKIVGGTTEEEVKKQFEILVNDINHIESDK 65

Query: 70 VPIPNYKN 77
          +P+PNYKN
Sbjct: 66 IPLPNYKN 73


>30190.m010906 transcription factor, putative
          Length = 80

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query: 8  NPNSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIEL 67
          N +S+WT +++KLFE ALA+YDK+TPDRW+NIAK VG  + +EVKR YD+L+ D+ +IE 
Sbjct: 10 NSSSSWTPRENKLFEKALALYDKETPDRWQNIAKAVGGKSADEVKRHYDVLIEDVKHIES 69

Query: 68 DKVPIPNYKN 77
           +VP PNYK+
Sbjct: 70 GRVPFPNYKS 79


>30170.m014046 DNA binding protein, putative
          Length = 95

 Score = 95.1 bits (235), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 53/72 (73%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
          +S+WT KQ+KLFE ALA+YDKDTPDRW N+A+ VG    EEVKR Y++LV D+  IE   
Sbjct: 4  SSSWTPKQNKLFENALAIYDKDTPDRWHNLARAVGGKTIEEVKRHYELLVEDVREIEAGH 63

Query: 70 VPIPNYKNCYEG 81
          VP+PNYK    G
Sbjct: 64 VPLPNYKKAGLG 75


>30190.m010902 DNA binding protein, putative
          Length = 107

 Score = 91.3 bits (225), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 49/65 (75%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WTA+Q+K FE ALA+YDKDTPDRW N+A+ VG    EEVKR YD+LV D+  IE  +VP 
Sbjct: 14 WTAQQNKAFERALAVYDKDTPDRWANVARAVGGKTPEEVKRHYDLLVEDVKYIESGQVPF 73

Query: 73 PNYKN 77
          PNY+ 
Sbjct: 74 PNYRT 78


>30170.m014056 DNA binding protein, putative
          Length = 94

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 49/64 (76%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          WT KQ+KLFE ALA YDKDTPDRW+N+AK VG  + +EVKR YD LV D+  IE  + P+
Sbjct: 17 WTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSPDEVKRHYDRLVEDLIYIESGQAPL 76

Query: 73 PNYK 76
          PNYK
Sbjct: 77 PNYK 80


>29681.m001296 DNA binding protein, putative
          Length = 307

 Score = 72.0 bits (175), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 44/66 (66%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
          N+ WT  ++K+FE ALA+YDKDTPDRW  +A ++      +V ++Y  L  D+NNIE   
Sbjct: 26 NTKWTPAENKMFENALAVYDKDTPDRWHKVAAMIPGKTVGDVIKQYRELEVDVNNIEAGL 85

Query: 70 VPIPNY 75
          VPIP Y
Sbjct: 86 VPIPGY 91


>30131.m007263 DNA binding protein, putative
          Length = 295

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 8/94 (8%)

Query: 10  NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
           +S WT +Q K FE ALA Y +D  DRW  IA  V     EE+K  Y++LV D+N IE   
Sbjct: 9   SSVWTREQDKAFEDALATYPEDDLDRWEKIAADVPGKTSEEIKFHYELLVEDVNQIEAGC 68

Query: 70  VPIPNYKNCY--------EGKSRQESKIISNNEE 95
           VP+PNY +          EG S++ S +  +N E
Sbjct: 69  VPLPNYSSSEGSTGHAGDEGTSKKGSHLGHHNNE 102


>29610.m000410 DNA binding protein, putative
          Length = 288

 Score = 65.1 bits (157), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
          ++ WT +++K FE ALA+YD+  PDRWR +A ++      +V ++Y  L +D+++IE  K
Sbjct: 20 STEWTREENKQFERALAIYDEHEPDRWRKVAAMIPGKTVYDVIKQYRELEDDVSDIEAGK 79

Query: 70 VPIPNYKNC 78
          VPIP Y NC
Sbjct: 80 VPIPGY-NC 87


>28288.m000014 DNA binding protein, putative
          Length = 307

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 44/69 (63%)

Query: 10 NSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDK 69
           + WT +++K FE ALA++DKD PDRW+ +A ++      +V ++Y  L  D+++IE   
Sbjct: 26 GTKWTPEENKRFENALALFDKDEPDRWQKVAALIPGKTVGDVIKQYRELEEDVSDIEAGL 85

Query: 70 VPIPNYKNC 78
          +PIP Y + 
Sbjct: 86 IPIPGYSSS 94


>30055.m001589 DNA binding protein, putative
          Length = 214

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query: 7  SNPNSNWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIE 66
          ++P+S+W+  + KLFE AL ++ ++TPDRW  IA  V   +  +VK  Y+ LV D+  I+
Sbjct: 4  ASPSSSWSRLEDKLFERALVVFPEETPDRWEKIASHVPGKSRFDVKEHYEDLVYDVKEID 63

Query: 67 LDKVPIPNYKNCY 79
            +V +P+Y + +
Sbjct: 64 SGRVELPSYGDQF 76


>30155.m001616 DNA binding protein, putative
          Length = 240

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 13 WTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKVPI 72
          W   + K FE AL  + +D PDRW+ IA  +G +  +EV   Y+ LV D+N I+  +V +
Sbjct: 21 WNLSEEKQFEKALVQFSEDLPDRWQQIADCIGKS-VQEVTEHYEELVRDVNEIDSGRVEL 79

Query: 73 PNYKN---CYEGKSRQESKI 89
          P Y++   C+E      S+I
Sbjct: 80 PCYRDGNSCWESMGAVPSEI 99


>30174.m008717 DNA binding protein, putative
          Length = 297

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 2/65 (3%)

Query: 13 WTAKQHKLFEYALAMY--DKDTPDRWRNIAKIVGDTNEEEVKREYDILVNDINNIELDKV 70
          W+ ++   FE A+A +  + D+ ++W  IA +V   N EE+K+ Y +LV D++ IE   V
Sbjct: 8  WSREEDIAFENAIATHWIEDDSEEQWEKIASMVPSRNIEELKQHYRLLVEDVDAIEAGNV 67

Query: 71 PIPNY 75
          P+PNY
Sbjct: 68 PLPNY 72


>30076.m004565 conserved hypothetical protein
          Length = 109

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 12 NWTAKQHKLFEYALAMYDKDTPDRWRNIAKIVGD-TNEEEVKREYDILVNDINNIE 66
           W+ +++KLFE ALA+ D++ PDRW  +A +VG   + ++V+  Y IL+ D+  IE
Sbjct: 4  GWSWEENKLFELALAIVDEEHPDRWEAVASMVGGKKSADDVQNHYVILLQDLQCIE 59