Jatropha Genome Database

JcCB0004221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004221.20 + phase: 0 
         (115 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001324 60S acidic ribosomal protein P0, putative               177   8e-46
29669.m000815 60S acidic ribosomal protein P0, putative               156   2e-39

>29681.m001324 60S acidic ribosomal protein P0, putative
          Length = 323

 Score =  177 bits (449), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 94/110 (85%)

Query: 1   MAIKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNT 60
           MA+KPTKAQKK +YD+KLCR LDEYSQILVV ADNVGSNQLQSIR+GLRGDS+VLMGKNT
Sbjct: 1   MAVKPTKAQKKVEYDKKLCRFLDEYSQILVVAADNVGSNQLQSIRQGLRGDSVVLMGKNT 60

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           MMKRS++LHAEKTGN+AF +            FTKG+LKEVREEIAKYKV
Sbjct: 61  MMKRSVRLHAEKTGNNAFLNLIPLLVGNVGLIFTKGELKEVREEIAKYKV 110


>29669.m000815 60S acidic ribosomal protein P0, putative
          Length = 320

 Score =  156 bits (395), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/110 (69%), Positives = 86/110 (78%)

Query: 1   MAIKPTKAQKKTQYDQKLCRLLDEYSQILVVGADNVGSNQLQSIRRGLRGDSIVLMGKNT 60
           MA KP+KA KK  YD KLC+LLDEYSQIL+V ADNVGSNQLQ+IRRGLRGDS+VLMGKNT
Sbjct: 1   MAGKPSKADKKLAYDAKLCQLLDEYSQILIVAADNVGSNQLQNIRRGLRGDSVVLMGKNT 60

Query: 61  MMKRSIKLHAEKTGNDAFNSXXXXXXXXXXXXFTKGDLKEVREEIAKYKV 110
           MMKRSI++HA+ TGN    +            FTKGDLKEV EE+AKYKV
Sbjct: 61  MMKRSIRVHADNTGNKTILNLIPLLQGNVGLIFTKGDLKEVSEEVAKYKV 110