Jatropha Genome Database

JcCB0004021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0004021.20 - phase: 0 
         (204 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29660.m000784 conserved hypothetical protein                          298   8e-82
30186.m001318 conserved hypothetical protein                          293   5e-80
30169.m006584 pentatricopeptide repeat-containing protein, putative   141   2e-34
29612.m000383 conserved hypothetical protein                          141   2e-34
33465.m000010 hypothetical protein                                    133   6e-32

>29660.m000784 conserved hypothetical protein
          Length = 300

 Score =  298 bits (764), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 140/172 (81%), Positives = 154/172 (89%)

Query: 10  SKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMGTYG 69
           SKEAVYGALDAWVAWE  FPI S++R L+ LEKEQQWH+VVQVIKWMLSKGQGNTMGTYG
Sbjct: 96  SKEAVYGALDAWVAWEHNFPIASLKRVLILLEKEQQWHKVVQVIKWMLSKGQGNTMGTYG 155

Query: 70  QLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKGLEA 129
           QLIRALDMDHRA+EAH+FW KKIG DLHSVPW+LC  M+S+YYRNNMLE LVKLFKGLEA
Sbjct: 156 QLIRALDMDHRANEAHMFWLKKIGLDLHSVPWQLCHRMISVYYRNNMLESLVKLFKGLEA 215

Query: 130 FDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETHKGDNKKFRTT 181
           FDRKPP+KSI+QKVA+AYEMLGMLEEK+RV QKY  LF ET KG  KK R+T
Sbjct: 216 FDRKPPDKSILQKVADAYEMLGMLEEKERVLQKYKDLFKETEKGRPKKSRST 267


>30186.m001318 conserved hypothetical protein
          Length = 317

 Score =  293 bits (749), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 137/172 (79%), Positives = 152/172 (88%)

Query: 10  SKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMGTYG 69
           SKEAVYGA+DAWVAWE  FPI S++R L+ LEKEQQWHRVVQVIKW++SKGQGNTMGTYG
Sbjct: 64  SKEAVYGAVDAWVAWEHNFPIASLKRVLILLEKEQQWHRVVQVIKWIISKGQGNTMGTYG 123

Query: 70  QLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKGLEA 129
           QLIRALDMDHRA+EAH+FW KKIG DLHSVPW+LC  M+S+YYRNNMLE LVKL KGLEA
Sbjct: 124 QLIRALDMDHRANEAHMFWLKKIGLDLHSVPWQLCHRMISVYYRNNMLESLVKLSKGLEA 183

Query: 130 FDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETHKGDNKKFRTT 181
           FD KPP+KSIVQKVA+AYEMLGMLEEK+RV QKY  LF ET KG  KK R+T
Sbjct: 184 FDHKPPDKSIVQKVADAYEMLGMLEEKERVLQKYKDLFKETEKGRPKKSRST 235


>30169.m006584 pentatricopeptide repeat-containing protein, putative
          Length = 359

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 96/148 (64%), Gaps = 1/148 (0%)

Query: 7   LKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKGQGNTMG 66
           L + KE VYGALD+ +AWE +FP+ ++++AL TLE EQ+W R++QVIKWMLSKGQG TMG
Sbjct: 98  LSNVKEEVYGALDSLIAWELEFPLIAVKKALKTLENEQEWKRIIQVIKWMLSKGQGRTMG 157

Query: 67  TYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECLVKLFKG 126
           TY  L+ AL  D R DEA   W+K    +L   P      M+SIYY+  M E + ++F  
Sbjct: 158 TYFTLLNALAEDERLDEAEELWTKLFSDNLEGTPRNFFDKMISIYYKREMHEKMFEIFAD 217

Query: 127 LEAFDRKPPEKSIVQKVANAYEMLGMLE 154
           +E    + P  SIV  + + ++ LGML+
Sbjct: 218 MEELGVR-PSVSIVNMMGSVFQKLGMLD 244


>29612.m000383 conserved hypothetical protein
          Length = 224

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/171 (41%), Positives = 106/171 (61%), Gaps = 1/171 (0%)

Query: 1   MNMFLNLKDSKEAVYGALDAWVAWERQFPIGSIRRALLTLEKEQQWHRVVQVIKWMLSKG 60
           + +   L D KE VYGALD W AWE +FP+ ++ + L  L K  QW RV+QV KWMLSKG
Sbjct: 40  VRIVCELPDEKECVYGALDKWTAWETEFPLIAVAKGLRILRKHNQWLRVIQVAKWMLSKG 99

Query: 61  QGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIYYRNNMLECL 120
           QG TMGTY  L+ A DMD+R DEA   W+  + T + S+   L   M+S+Y  +NM + +
Sbjct: 100 QGTTMGTYDTLLLAFDMDNRVDEAASLWNMILHTHVRSISKRLFSRMISLYDHHNMPDGI 159

Query: 121 VKLFKGLEAFDRKPPEKSIVQKVANAYEMLGMLEEKDRVEQKYIHLFSETH 171
           +++F  +E    +P E + V++VA A++ LG  E++  V ++Y+  +   H
Sbjct: 160 IEIFADMEELGVRPDEDT-VRRVARAFKELGQEEKQKLVLKRYMSRWKYIH 209


>33465.m000010 hypothetical protein
          Length = 72

 Score =  133 bits (334), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 59/72 (81%), Positives = 67/72 (93%)

Query: 52  VIKWMLSKGQGNTMGTYGQLIRALDMDHRADEAHLFWSKKIGTDLHSVPWELCKLMLSIY 111
           VIKW++SKGQGNTMGTYGQLIRALDMDHRA+EAH+FW KKIG DLHSVPW+LC  M+S+Y
Sbjct: 1   VIKWIISKGQGNTMGTYGQLIRALDMDHRANEAHMFWLKKIGLDLHSVPWQLCHRMISVY 60

Query: 112 YRNNMLECLVKL 123
           YRNNMLE LVK+
Sbjct: 61  YRNNMLESLVKV 72