Jatropha Genome Database

JcCB0003651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003651.10 + phase: 0 /partial
         (573 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28455.m000363 hypothetical protein                                    364   e-101

>28455.m000363 hypothetical protein
          Length = 380

 Score =  364 bits (934), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/371 (54%), Positives = 246/371 (66%), Gaps = 24/371 (6%)

Query: 204 MQQFTLYRGQQFDLNKVHLXXXXXXXXXHMLVYPSTASSKGNSHGLAGSMHDGTCPTAFQ 263
           MQ F  Y+G Q DLNK HL         HM  YPS ASS G S+G  G M DGTCP+ FQ
Sbjct: 1   MQTFASYKGGQLDLNKAHLDDSSCCSDDHMFAYPSRASSDGGSNGFIGGMQDGTCPSVFQ 60

Query: 264 GNKVNQFSNGVSAMLKQDNIVNLALANSNRENKSADNWTRNTGIISSPESIIRTAVDISE 323
              +++FSN  S M+K+ N V+LA  + NR+N S D              +IR+   ISE
Sbjct: 61  KKDIDEFSNEASDMIKEHNHVHLAHVDFNRKNMSTD-------------PMIRSPAIISE 107

Query: 324 DLGCCSGH-KNGIDELKSKLAREVSSEKSEIENALFSCNDQSQNTCQDGHGNKSPSSCKS 382
           DLGCC G  KN I ELKSKL+ EVSSEKSE+E+   SC D SQN  Q  HG KSP+SCKS
Sbjct: 108 DLGCCGGELKNNIVELKSKLSGEVSSEKSEVESVTLSCTDLSQNAFQYEHG-KSPASCKS 166

Query: 383 YCISDNDSSSAKTKYSGITSGVLKTQLGSQVGDVISGEHDQKTCDGIDIKNDCYTKKEES 442
            CISDNDSSSAKT  SGI +  LKT+L SQV DV++ EH+Q+T DG ++K+DCY K+EES
Sbjct: 167 CCISDNDSSSAKTANSGIMNQYLKTRLESQVADVLADEHEQRTLDGSNLKDDCYNKEEES 226

Query: 443 ANVDVLIKEAAEMLIQISAKCSASHQYLYAKVGSKQMEDDKREQTQCSCDSFELMTLNLT 502
             VD+LI+EAAE LI+I  + SA +Q         +ME++++ Q  CS DSFEL+ +NLT
Sbjct: 227 GKVDILIQEAAESLIRIYTEQSACNQ---------EMENERKVQPLCSFDSFELIAMNLT 277

Query: 503 ESNLDDNSVSSKPIEVDDIETXXXXXXXXXXXXXXXXQKEILPSLASLSRHEILEDINIM 562
           ESN+DD+SVSSKP E+ D+E                 Q+EILPSL SLSR EILEDINIM
Sbjct: 278 ESNVDDDSVSSKPFEISDMEAKEFGLRLRRGRRMKDFQREILPSLTSLSRPEILEDINIM 337

Query: 563 EGVLRSREYRK 573
           EGVLRSREYRK
Sbjct: 338 EGVLRSREYRK 348