Jatropha Genome Database

JcCB0003511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003511.10 - phase: 0 
         (277 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m009098 RNA binding protein, putative                           167   4e-42

>30174.m009098 RNA binding protein, putative
          Length = 355

 Score =  167 bits (424), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 99/207 (47%), Positives = 115/207 (55%), Gaps = 16/207 (7%)

Query: 25  LEINRYPRDLLQRFMSTETQQQKTPSSXXXXXXXXXLNLGLSLGGRFGVDKSAKKLTRSS 84
           LEIN+YPRDLLQRFMS ++QQ KT            LNLGLSLGGRFGVDK++KKLTRSS
Sbjct: 23  LEINKYPRDLLQRFMSNDSQQLKTSEGEEDNTEEIELNLGLSLGGRFGVDKTSKKLTRSS 82

Query: 85  SIAGSIPLAREHDAFNT-PPLSYPVLMRTSSLPXXXXXXXXXXXXMQSLRRLEAKRRRSE 143
           SIAGSIPL R+HDAFNT P +SYP+L+RTSSLP            MQ+LRR+EAKRRRSE
Sbjct: 83  SIAGSIPLVRDHDAFNTQPAVSYPLLIRTSSLPTETEEEWRKRKEMQTLRRMEAKRRRSE 142

Query: 144 KQKXXX-------XXXXXXXXXXXXXXWI-PTWARQGSSGAMSVNRCNTLHXXXXXXXXX 195
           KQK                        W+ PTW+R       +VNR NTL          
Sbjct: 143 KQKNLNLNRGELSLEDERKGLNANRGNWVAPTWSR-------NVNRGNTLQGLIGQQQGS 195

Query: 196 XXXXXXXXXXXXXXXXXXXKPIQGSIS 222
                              KP+QG+ S
Sbjct: 196 QGSVESQGGSSSGISEMESKPVQGTSS 222