Jatropha Genome Database

JcCB0003421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003421.10 - phase: 2 /partial
         (267 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29999.m000208 DNA binding protein, putative                           457   e-129
30078.m002221 DNA binding protein, putative                           296   5e-81
29589.m001275 protein binding protein, putative                       270   4e-73
30170.m013739 DNA binding protein, putative                           108   2e-24
29624.m000323 conserved hypothetical protein                          100   1e-21
29844.m003292 hypothetical protein                                     97   6e-21
30150.m000485 DNA binding protein, putative                            95   4e-20
29992.m001424 hypothetical protein                                     80   8e-16
29647.m002062 conserved hypothetical protein                           69   2e-12
29687.m000585 hypothetical protein                                     48   4e-06

>29999.m000208 DNA binding protein, putative
          Length = 856

 Score =  457 bits (1175), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/263 (86%), Positives = 243/263 (92%)

Query: 1   AHDFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQD 60
           AHDFST  F+DRTVILCDQCEREFHVGCLRD+G CDLKEIPKDNWFCSNDC+RI+ ALQ+
Sbjct: 590 AHDFSTHTFNDRTVILCDQCEREFHVGCLRDNGLCDLKEIPKDNWFCSNDCNRIYEALQN 649

Query: 61  FVSSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIF 120
           FVSSG+QMIPSLQL+IIT KHAEKGL +DG +ND QWRILMGKSR +EDLSLLSA AAIF
Sbjct: 650 FVSSGVQMIPSLQLNIITGKHAEKGLYIDGQANDFQWRILMGKSRYQEDLSLLSAAAAIF 709

Query: 121 RECFDPIVAKTGRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAEL 180
           RECFDPIVAK+GRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGR+ AEL
Sbjct: 710 RECFDPIVAKSGRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGRDVAEL 769

Query: 181 PLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQL 240
           PLVATSREHQGKGYFQALFSCIERLLCS        PAAEEAESIWTRRFGFRKM+E QL
Sbjct: 770 PLVATSREHQGKGYFQALFSCIERLLCSLNVVKLVLPAAEEAESIWTRRFGFRKMTEEQL 829

Query: 241 SKYTRELQVTIFKGTTMLEKEVP 263
           S+YTRELQ+TIFKGT+MLEKEVP
Sbjct: 830 SQYTRELQLTIFKGTSMLEKEVP 852


>30078.m002221 DNA binding protein, putative
          Length = 855

 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 146/265 (55%), Positives = 189/265 (71%), Gaps = 4/265 (1%)

Query: 1   AHDFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQD 60
            +DFS   F  RT+ILCDQC +EFHVGCLR     +LKE+PK  WFC  DC RI +AL+ 
Sbjct: 578 GYDFSRSGFGPRTIILCDQCGKEFHVGCLRSHKIANLKELPKGKWFCCPDCGRIHSALKK 637

Query: 61  FVSSGIQMIPSLQLDIITRKHAEKGLLMDGLSN-DVQWRILMGKSRRKEDLSLLSATAAI 119
            ++   ++IP+  L+++ +K+ EKGL  + ++N DV+W++L GKS   E   LLS   AI
Sbjct: 638 LLAREAEIIPNKLLEVVMKKNEEKGL--ETVNNIDVRWKLLTGKSASPETKLLLSQALAI 695

Query: 120 FRECFDPIVAKTGRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAE 179
           F+ECFDPIV  TGRDLIP+MVYG+N  GQ++GGMYC +L+V + VVSA ++RIFG+E AE
Sbjct: 696 FQECFDPIVDTTGRDLIPLMVYGKNSKGQDYGGMYCAVLMVNSFVVSAAIVRIFGQEVAE 755

Query: 180 LPLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQ 239
           LPLVATS  + GKGYFQ LFS IE+LL          PAAEEAESIWT +FGF+K+   Q
Sbjct: 756 LPLVATSNGNHGKGYFQLLFSFIEKLLAYLKVHSIVLPAAEEAESIWTDKFGFQKIKPDQ 815

Query: 240 LSKYTRE-LQVTIFKGTTMLEKEVP 263
           LSKY +   Q+  FKGT+ML+K VP
Sbjct: 816 LSKYRKSCCQILTFKGTSMLQKAVP 840


>29589.m001275 protein binding protein, putative
          Length = 1042

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 138/271 (50%), Positives = 180/271 (66%), Gaps = 7/271 (2%)

Query: 1    AHDFSTDIFDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQD 60
             HDF   IF  RTV+LCDQCE+EFHVGCL+D    DLKE+PK NWFC +DC RI +AL+ 
Sbjct: 764  GHDFDK-IFGPRTVLLCDQCEKEFHVGCLKDHNMEDLKELPKGNWFCCSDCCRIHSALEK 822

Query: 61   FVSSGIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLS-LLSATAAI 119
             V  G + +    L++I +K  EK   +D  + DV+WR+L  K     D + LLS   AI
Sbjct: 823  LVLRGEERLLDSSLNLINKKVQEKCAGIDCSNIDVRWRLLNDKINPAGDTAALLSEALAI 882

Query: 120  FRECFDPIV-----AKTGRDLIPVMVYGRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFG 174
              E F+PI+     +K  RDLI  MV+G N+ GQEFGGMYC +L++   VVS  ++R FG
Sbjct: 883  LHEQFNPILVAGTSSKADRDLITSMVFGDNLKGQEFGGMYCAVLMINQAVVSCAIIRFFG 942

Query: 175  REAAELPLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRK 234
             E AELPLVATS + QGKGYFQALF+CIE+LL          PAAEEAESIW  +FGFRK
Sbjct: 943  LELAELPLVATSSKAQGKGYFQALFTCIEKLLGFLNIKNLVLPAAEEAESIWINKFGFRK 1002

Query: 235  MSEGQLSKYTRELQVTIFKGTTMLEKEVPQI 265
            ++  +  K+ ++ Q+ +F+GT+ML K VP+I
Sbjct: 1003 LTHEEFLKFRKDYQMMVFQGTSMLHKPVPKI 1033


>30170.m013739 DNA binding protein, putative
          Length = 290

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 123/266 (46%), Gaps = 34/266 (12%)

Query: 6   TDIFDDRTVILCDQCEREFHVGCLRDSGRCDL-KEIPKDNWFCSNDCHRIFAALQDFVSS 64
            D+  D  ++ CDQC R+FHV C R  G   L ++    +WFCS+ C  +F+ LQ  +  
Sbjct: 39  NDVQQDGFILSCDQCPRKFHVACARSRGLIKLERKGTCYSWFCSDKCEYVFSGLQHLLGK 98

Query: 65  GIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAA------ 118
            + +                       ++++ W +L        DL +LSA  +      
Sbjct: 99  SVPVG----------------------TDNLTWTLLKRVEPDCFDLEVLSANNSKLKLAL 136

Query: 119 -IFRECFDPIV-AKTGRDLIPVMVY--GRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFG 174
            +  ECF+P   A TG+DL+  +++  G N++   F G Y VLL   N + +   +R+FG
Sbjct: 137 EVMHECFEPAKDAFTGKDLVEDVIFSSGSNLNRLNFLGFYTVLLERNNELTTVANVRVFG 196

Query: 175 REAAELPLVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRK 234
            + AE+P VAT  +++  G  + L + +ER L +        PAA      W + FGF  
Sbjct: 197 DKVAEVPFVATKFQYRRLGMCRVLMNELERQLLNLGVEKLVLPAAFSTLETWIKGFGFSV 256

Query: 235 MSEGQLSKYTRELQVTIFKGTTMLEK 260
           M+     K   +  +  F+GT + +K
Sbjct: 257 MTYSD-KKAHSDYPILFFQGTVLCQK 281


>29624.m000323 conserved hypothetical protein
          Length = 853

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 122/267 (45%), Gaps = 29/267 (10%)

Query: 9   FDDRTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDF----VSS 64
            +D  V+ C QCER++HV CL +     L+  PK++WFCS  C +IF  L +     +  
Sbjct: 489 MEDDGVLDCTQCERKYHVVCLGNKREECLEYFPKEHWFCSKRCQQIFLGLHELLGKKIPV 548

Query: 65  GIQMIPSLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECF 124
           G+  +    L  I      +   ++ LS               E+ S+L+    +  E F
Sbjct: 549 GLHNLTWTLLKSIQFNDQCEASDIEALS---------------ENYSMLNIALDMMHEFF 593

Query: 125 DPI-VAKTGRDLIPVMVYGR--NISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELP 181
           DP+    T RDL+  +++ +   ++   F G Y VLL   +  +S   +R++G + AE+P
Sbjct: 594 DPVEEPHTKRDLLKDVIFSKRSELNRLNFHGFYTVLLQKDDEFISVATVRVYGEKVAEIP 653

Query: 182 LVATSREHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSE---G 238
           LV T  +++  G    L + +E+ L          PA   A + W   FGF K++E    
Sbjct: 654 LVGTRFQYRRLGMCCILMNVLEKKLRELGVQRLILPAVPSALNTWIGSFGFSKLTELDRL 713

Query: 239 QLSKYTRELQVTIFKGTTMLEKEVPQI 265
           QL  YT       F+ T M  K + +I
Sbjct: 714 QLLDYT----FLDFQDTIMCHKLLTKI 736


>29844.m003292 hypothetical protein
          Length = 1604

 Score = 97.4 bits (241), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 118/255 (46%), Gaps = 22/255 (8%)

Query: 14   VILCDQCEREFHVGCLRDSGRCDLKEIPKDNW---FCSNDCHRIFAALQDFVSSGIQMIP 70
            ++ C  C +++H  CL+D    D   I  +N    FC   C  +F  LQ ++    ++  
Sbjct: 826  LLTCSLCAKKYHKSCLQD---VDAPCIDFNNSTPCFCGKTCRELFEQLQKYLGIKHELES 882

Query: 71   SLQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECFDPIVAK 130
                 ++ R   +  + + GL   V+              S L+   ++  ECF PIV +
Sbjct: 883  GFSWSLVHRMDIDLDMSLQGLPQRVECN------------SKLAVALSVMDECFLPIVDR 930

Query: 131  -TGRDLIPVMVY--GRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATSR 187
             +G ++I  ++Y  G N +   + G Y  +L   + ++SA  +R  G + AE+P + T  
Sbjct: 931  RSGINIIQNVLYNCGSNFNRLNYSGFYAAILERGDEIISAASIRFHGTQLAEMPFIGTRH 990

Query: 188  EHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQLSKYTREL 247
             ++ +G  + LFS IE  LCS        PA  E    WT  FGF  +S+  L +  + +
Sbjct: 991  VYRRQGMCRRLFSAIESALCSLKVQKLIIPAISELTHTWTGVFGFTTLSD-SLKQELKSM 1049

Query: 248  QVTIFKGTTMLEKEV 262
             + +F G  ML+K++
Sbjct: 1050 NMLVFPGIDMLQKQL 1064


>30150.m000485 DNA binding protein, putative
          Length = 1336

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 112/254 (44%), Gaps = 31/254 (12%)

Query: 17   CDQCEREFHVGCLRDSGRCDLKEIPK----DNWFCSNDCHRIFAALQDFVSSGIQMIPSL 72
            C QCE ++H  C ++      K I K    D WFC   C  ++  LQ  V          
Sbjct: 931  CSQCEHKYHDSCWKN------KTIGKGGASDTWFCGGSCQAVYFGLQSRVG--------- 975

Query: 73   QLDIITRKHAEKGL---LMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECFDPIV- 128
               II   H   G+   L+  +  D +       + + E  S L+    I  ECF  +V 
Sbjct: 976  ---IIN--HIADGVCWTLLKCIHEDQKVHSAQRLALKAECNSKLAVALTIMEECFQSMVD 1030

Query: 129  AKTGRDLIPVMVYG--RNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATS 186
             +TG D+IP ++Y      +   F G Y V+L   +V++S   +RI G   AE+PL+AT 
Sbjct: 1031 PRTGIDMIPHVLYNWRSEFARLNFHGFYTVVLEKDDVLLSVASIRIHGATVAEMPLIATC 1090

Query: 187  REHQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQLSKYTRE 246
              ++ +G  + L + IE +L S         A  +    WT  FGF  MS  +     + 
Sbjct: 1091 SNYRRQGMCRRLMTAIEEMLISFKVEKLVVSAIPDLVETWTEGFGFTPMSNDEKQSLNK- 1149

Query: 247  LQVTIFKGTTMLEK 260
            + + +F GT +L+K
Sbjct: 1150 INLMVFPGTILLKK 1163


>29992.m001424 hypothetical protein
          Length = 499

 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 105/248 (42%), Gaps = 23/248 (9%)

Query: 17  CDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDFVSSGIQMIPSLQLDI 76
           C QC R +HV CL   G     + P +N FCS  C+ + A L   +  GI    S+    
Sbjct: 202 CLQCARAYHVHCLTKDGCLLPTDYPSEN-FCSKSCYELCAQLHQLL--GISNPTSVDGLT 258

Query: 77  ITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECFDPIVAKTGRDLI 136
            T   + K +          +  +   S   +   +L      FR   +P    T +D++
Sbjct: 259 WTLTRSSKDV--------YNFPGMPRSSTHVKSFQILRVMHECFRSVKEP---HTQKDMV 307

Query: 137 PVMVY--GRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATSREHQGKGY 194
             ++Y  G       F G Y V+L   + +VS   LRI G +AAE+PLVAT    + +G 
Sbjct: 308 TDLIYNSGSKFKRLNFHGFYAVVLNRGDQIVSVATLRIHGLKAAEMPLVATPFNFRRQGM 367

Query: 195 FQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMS---EGQLSKYTRELQVTI 251
            + L   + +LL          PA  +   +W   FGF +M      QLS Y+       
Sbjct: 368 CRLLMQEVLKLLNKFRVERLILPAIPQLRKMWEASFGFSEMPLSERQQLSGYS----FVG 423

Query: 252 FKGTTMLE 259
           F+GT ML+
Sbjct: 424 FQGTMMLQ 431


>29647.m002062 conserved hypothetical protein
          Length = 1700

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 102/252 (40%), Gaps = 36/252 (14%)

Query: 12   RTVILCDQCEREFHVGCLRDSGRCDLKEIPKDNWFCSNDCHRIFAALQDFVSSGIQMIPS 71
              ++ C  CE ++H  C ++  +  +   P    FC N+C  ++  LQ       ++   
Sbjct: 935  HALVTCHLCEDKYHHSCFQE--KDIINADPGSPSFCGNNCQELYERLQMLFGVKQELEAG 992

Query: 72   LQLDIITRKHAEKGLLMDGLSNDVQWRILMGKSRRKEDLSLLSATAAIFRECFDPIV-AK 130
                 + R      + + G+S    W++           S ++    I  ECF P+V  K
Sbjct: 993  FSWTFVRRFDVSSDISVSGMS----WKVDCN--------SKVAVALQIMDECFVPMVDHK 1040

Query: 131  TGRDLIPVMVY--GRNISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATSRE 188
            +G +LI  +VY  G N +   + G +  +L   + +++A  +R F      +P+      
Sbjct: 1041 SGVNLIRNIVYSFGSNFNRLNYSGFFNAVLERGDEMIAAASIRYF----YSMPV------ 1090

Query: 189  HQGKGYFQALFSCIERLLCSXXXXXXXXPAAEEAESIWTRRFGFRKMSEGQLSKYTRELQ 248
                    +  S +   LCS        PA  E    WT  FGF+ + EG   +  R + 
Sbjct: 1091 --------SFHSSLSMGLCSLNVGKLVIPAISELTGTWTSVFGFKHL-EGSDKQIMRNMN 1141

Query: 249  VTIFKGTTMLEK 260
            + +F G  ML+K
Sbjct: 1142 MMVFPGVDMLQK 1153


>29687.m000585 hypothetical protein
          Length = 275

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 11/125 (8%)

Query: 93  NDVQWRILMGKSRRK--------EDLSLLSATAAIFRECFDPIV-AKTGRDLIPVMVYGR 143
           N++ W +L               E+ S LS    +  ECF P+   +T  D +  +++ +
Sbjct: 28  NNLTWTLLKSNHSSDHKPDASDIENYSKLSIALHVMHECFQPVEEPRTKGDFLKDVIFRK 87

Query: 144 --NISGQEFGGMYCVLLLVKNVVVSAGLLRIFGREAAELPLVATSREHQGKGYFQALFSC 201
              ++   F G Y VLL   +  ++   +R++G + AE+PLV T  +++  G    L + 
Sbjct: 88  RSELNRLNFRGFYTVLLQKDDEFITVATVRVYGEKVAEIPLVGTRVQYRRLGMCGILMNV 147

Query: 202 IERLL 206
           +E+ L
Sbjct: 148 LEKNL 152