Jatropha Genome Database

JcCB0003261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003261.20 - phase: 0 
         (441 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29656.m000470 3-dehydroquinate synthase, putative                     547   e-156
52313.m000014 3-dehydroquinate synthase, putative                     167   1e-41

>29656.m000470 3-dehydroquinate synthase, putative
          Length = 338

 Score =  547 bits (1409), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/331 (82%), Positives = 292/331 (88%), Gaps = 2/331 (0%)

Query: 2   ANTFSPSLSAANSSTLRSKNLPDFYLQLKNPNLISFRSERVGLPVLN-STXXXXXXXXXX 60
           ANTFS SLS +++   R +NL  F L+  NPN I  RS+RVGLP L+ +           
Sbjct: 5   ANTFSLSLSNSSTLKPR-RNLTHFCLRFNNPNGIFLRSKRVGLPALSLNRIGSSRIVASS 63

Query: 61  XXQVMDQSVGEASSKAPTIVEVDLGNRSYPIYIGSGLLDQPELLQRHVHGKRVLVVTNNT 120
             QVMDQSV  ASSKAPTIVEVDLGNRSYPIYIGSGLL QPELLQRHVHGKRVLVVTN+T
Sbjct: 64  SAQVMDQSVAAASSKAPTIVEVDLGNRSYPIYIGSGLLHQPELLQRHVHGKRVLVVTNST 123

Query: 121 VAPIYLDRVVDALTRGNPNVSVESVILPDGEKYKNMETLMKVFDKAIESRLDRRCTFVAL 180
           VAP+YLD+VVDALTR NPNVSVESVILPDGEK+KNME LMK+FDKAI+SRLDR+CTFVAL
Sbjct: 124 VAPLYLDKVVDALTRDNPNVSVESVILPDGEKHKNMEVLMKIFDKAIQSRLDRKCTFVAL 183

Query: 181 GGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFYQPQC 240
           GGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINH LGKNLIGAFYQPQC
Sbjct: 184 GGGVIGDMCGYAAASFLRGVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQC 243

Query: 241 VLIDTDTLNTLPNRELASGLAEVVKYGLIRDAEFFEWQEKNMPKLMARDPDALAYAIKRS 300
           VLIDTDTLNTLP+RELASG AEV+KYGLIRDAEFFEWQEKNMPKLMARDP  LAYAIKRS
Sbjct: 244 VLIDTDTLNTLPDRELASGFAEVIKYGLIRDAEFFEWQEKNMPKLMARDPSVLAYAIKRS 303

Query: 301 CENKAEVVSLDEKESGLRATLNLGHTFGHAI 331
           CENKAEVVSLDEKESGLRATLNLGHTFGH +
Sbjct: 304 CENKAEVVSLDEKESGLRATLNLGHTFGHEL 334


>52313.m000014 3-dehydroquinate synthase, putative
          Length = 112

 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/112 (70%), Positives = 84/112 (75%)

Query: 330 AIETGFGYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMT 389
           AIET  GYGQWLHGE            SYRLGWIDDS+VKRVH+IL+QAKLPT+PP+TMT
Sbjct: 1   AIETSVGYGQWLHGEAVAAGMVMAVEMSYRLGWIDDSLVKRVHSILEQAKLPTSPPETMT 60

Query: 390 VEMFKSVMAVDKKVADXXXXXXXXXXXXXNCVFTGDYDRKALDDTLRAFCKS 441
           VEMFKSVMAVDKKVAD             NCVFTGDYDRKALDDTL AFCKS
Sbjct: 61  VEMFKSVMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLHAFCKS 112