Jatropha Genome Database

JcCB0003071.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0003071.30 - phase: 0 
         (398 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29792.m000621 conserved hypothetical protein                          326   1e-89
30154.m001142 conserved hypothetical protein                          172   3e-43

>29792.m000621 conserved hypothetical protein
          Length = 389

 Score =  326 bits (835), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 169/293 (57%), Positives = 199/293 (67%), Gaps = 28/293 (9%)

Query: 124 GDGKFRSPWMLPQH-QEDHGGHNPPHDGEYRSPWMLPPGPPQKHDHDHQSRGRQPKEKDE 182
           G G + +PW+ PQ   E H  HNP    +Y SPW+  P P  + +H        PK+ D 
Sbjct: 107 GGGGYSTPWLFPQQPDEAHRVHNPQRGSKYHSPWI--PLPQLQDEH--------PKQPDS 156

Query: 183 DDSRIPLRQQHDHRSRH----------------RPLGLRAPAPQKTRPITWLGAALCAIF 226
                P  Q+ DH   H                +  GLR PAPQ+TRPITWL AA CAIF
Sbjct: 157 AKVTSPQHQEEDHHPLHPRDPSLPPAHQENCPRQSSGLRTPAPQRTRPITWLAAAFCAIF 216

Query: 227 WXXXXXXXXXXXXXXXXXRPRNPRFEVSSVTLNAAYIDADALLNADISLLANFTNPNKKV 286
           W                 RPR+PRFEVS+V+LNA Y+DA +LLNADI+LLANFTNPNKKV
Sbjct: 217 WIVIFLGGLIVLIVYLVYRPRSPRFEVSNVSLNAVYVDAGSLLNADITLLANFTNPNKKV 276

Query: 287 SVDFNHMIIDLYYGNTLIATQYIESFSTPKTESRFANIHMISSQVRLPLGDSVQLQNQIS 346
           +VDFNH+IIDLYYGNTLIATQYIESFST + +S FAN+HM++SQV LPLG+S QLQ Q +
Sbjct: 277 AVDFNHIIIDLYYGNTLIATQYIESFSTARAQSVFANVHMVTSQVLLPLGESAQLQEQSN 336

Query: 347 KNGVIFDVKGSFKVRSNLGIF-RYSYRLYGHCKIMVTAPPSGVLRATRCTTKR 398
           KNG+IF+VKG F+VRSNLG F RYSYRLYGHC IM+TAPPSGVLRATRC TKR
Sbjct: 337 KNGIIFNVKGVFRVRSNLGSFLRYSYRLYGHCTIMLTAPPSGVLRATRCRTKR 389


>30154.m001142 conserved hypothetical protein
          Length = 254

 Score =  172 bits (435), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/239 (38%), Positives = 135/239 (56%), Gaps = 7/239 (2%)

Query: 160 PGPPQKHDHDHQSRGRQPKEKDEDDSRIPLRQQHDHRSRHRPLGLRAPAPQKTRPITWLG 219
           P PP +     Q  G QP     D   IP       RSR +P  L+ P P++T P+ W G
Sbjct: 23  PVPPNRIVISKQP-GIQPSSTAVD---IP--SSERKRSRKQP-SLQHPRPRRTNPVVWFG 75

Query: 220 AALCAIFWXXXXXXXXXXXXXXXXXRPRNPRFEVSSVTLNAAYIDADALLNADISLLANF 279
           A LC IF                  +PR+P F+  +  LN  Y D+    N D++ LANF
Sbjct: 76  AVLCLIFSLTLIFFGIATLIIYLAIKPRSPVFDTPNANLNNIYFDSPEYFNGDLTFLANF 135

Query: 280 TNPNKKVSVDFNHMIIDLYYGNTLIATQYIESFSTPKTESRFANIHMISSQVRLPLGDSV 339
           +NPN+K+ V F ++ I+LY+ + LI  Q ++ F+  + E+R  ++H ISS V LP     
Sbjct: 136 SNPNQKIDVRFEYVSIELYFFDRLIGIQTLQPFTQRRHETRLESVHFISSLVYLPHNLGA 195

Query: 340 QLQNQISKNGVIFDVKGSFKVRSNLGIFRYSYRLYGHCKIMVTAPPSGVLRATRCTTKR 398
           +LQ Q+  N VI++V+G+F+VR++LG+  YSY L+G C+I +T PP+GVL A  C TKR
Sbjct: 196 ELQKQVQSNKVIYNVRGTFRVRASLGLIHYSYWLHGRCEIEMTGPPTGVLVARSCKTKR 254