Jatropha Genome Database

JcCB0002291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0002291.10 - phase: 0 /partial
         (187 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

56072.m000045 conserved hypothetical protein                          234   2e-62
29631.m001048 conserved hypothetical protein                           69   1e-12

>56072.m000045 conserved hypothetical protein
          Length = 748

 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/194 (63%), Positives = 146/194 (75%), Gaps = 11/194 (5%)

Query: 1   MALKLFPVQFPIFSPLLNPNPI-QNPSQRPLFEVHFSRWNNANARKFNEQRRAQKEIEDD 59
           MALK FPVQFP+FSP LNPN + Q    RP  ++HFSRWNNANAR+FN++RRAQKEIE+D
Sbjct: 1   MALKFFPVQFPVFSPPLNPNLLSQTQHHRPPSDIHFSRWNNANAREFNDRRRAQKEIEED 60

Query: 60  IRRQRRFDSATNIVQNYDSATKTTSTETFKXXXXXXXXXXXXXX--XRKSKYSKPKT--- 114
           IRR RRF+SA NI+ NYDSAT   S E FK                 RKSKYSKP++   
Sbjct: 61  IRRNRRFNSAANIIDNYDSAT---SNENFKSKSIGTPSSPSAPSIPGRKSKYSKPESPTS 117

Query: 115 -HPAFRRVSTRITQPKDDESPIERNANIKLSEDGLSYVVNGAPFEFKYSYTESPKVKPLK 173
            HPAFR +S +IT+    E PI+RNA++KLSEDGLS+VV+GAPFEFKYSYTE+PK KP+K
Sbjct: 118 HHPAFRSIS-KITKKPLPEKPIDRNADVKLSEDGLSFVVDGAPFEFKYSYTETPKAKPIK 176

Query: 174 LREPPFSPFGPTTM 187
           LRE PFSPFGPTTM
Sbjct: 177 LREAPFSPFGPTTM 190


>29631.m001048 conserved hypothetical protein
          Length = 561

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 4/78 (5%)

Query: 114 THPAFR--RVSTRITQPKDDESPIERNAN--IKLSEDGLSYVVNGAPFEFKYSYTESPKV 169
           + PAF+     T+  +P   +  I  + +  + + E+G+SY + GAPFEF++SY+E+PKV
Sbjct: 53  SSPAFKLPHRRTKYYKPIKQDGVISSDGDRSVVVGENGVSYKLPGAPFEFQFSYSETPKV 112

Query: 170 KPLKLREPPFSPFGPTTM 187
           KPL +REP F PFGP TM
Sbjct: 113 KPLAIREPAFLPFGPPTM 130