Jatropha Genome Database

JcCB0001411.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001411.50 - phase: 0 /pseudo/partial
         (196 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29762.m000496 ubiquitin-activating enzyme E1, putative                218   1e-57
30142.m000654 rotamase, putative                                       48   4e-06

>29762.m000496 ubiquitin-activating enzyme E1, putative
          Length = 467

 Score =  218 bits (555), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 101/124 (81%), Positives = 112/124 (90%)

Query: 73  LLSAGSRITCKDFNEKVVKGEAHVLVDVRPAHHFKIVALPNALNIPLTSLEARLPEISSA 132
           LL A SRI  ++FNEKV+KGE HVLVDVRPAHHFKIVALPNALNIPL+SLEARLPEISSA
Sbjct: 344 LLPADSRINSREFNEKVIKGETHVLVDVRPAHHFKIVALPNALNIPLSSLEARLPEISSA 403

Query: 133 LKEAGGCRGTESESGVSLYIVCRRGNDSQRAVQMLHSKGFTSAKDIIGGLEAWSHDVDPK 192
           LKE G  RG +SESGV+LY+VCRRGNDSQRAVQ+LH KGF+ AKDIIGG+EAW+HDVDP 
Sbjct: 404 LKEEGERRGVDSESGVNLYVVCRRGNDSQRAVQLLHKKGFSIAKDIIGGIEAWAHDVDPN 463

Query: 193 FPTY 196
           FPTY
Sbjct: 464 FPTY 467


>30142.m000654 rotamase, putative
          Length = 294

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 93  EAHVLVDVRPAHHFKIVALPNALNIPLTSLEARLPEISSALKEAGGCRGTESESGVSLYI 152
           E   L+DVR     +  +LP    +PL    +   EI++             +S    Y+
Sbjct: 202 EEAQLIDVREPDEVEKASLPGFQILPLRQFGSWATEIAAKF-----------DSQKDTYV 250

Query: 153 VCRRGNDSQRAVQMLHSKGFTSAKDIIGGLEAWSHDVDPKFPTY 196
           +C  G  S +  + L ++GF    ++ GG+ A++  VDP  PTY
Sbjct: 251 MCHHGVRSLQVAKWLQTQGFKRVFNVAGGIHAYAVKVDPSVPTY 294