Jatropha Genome Database

JcCB0001411.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001411.30 + phase: 0 /partial
         (229 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30054.m000787 conserved hypothetical protein                          132   2e-31
29983.m003216 conserved hypothetical protein                           84   4e-17
30204.m001823 conserved hypothetical protein                           73   1e-13

>30054.m000787 conserved hypothetical protein
          Length = 280

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 113/200 (56%), Gaps = 15/200 (7%)

Query: 29  YGIFCLVNWK----NDRESHSHNNSKKYEQIALPRALLAIEASSWLSNRLPVAWFIYLLL 84
           YGI+  V +      D       N     Q+  P  L+A+  S  L ++LP AWFIYL +
Sbjct: 28  YGIYLFVEYTRAAGGDTLLAPATNDSSLIQLGRP-MLMAVSLSDSLVDKLPKAWFIYLFI 86

Query: 85  VIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNHNRQKDMPNDR 144
            +G  L VISCFGC+G+ TR+ CCL  YSVL++LL + +L  AAF+FF+ + ++++P D+
Sbjct: 87  GVGLILFVISCFGCIGSVTRNGCCLSCYSVLVILLILIELGCAAFIFFDKSWKEEIPTDK 146

Query: 145 SGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLRYANRVNDYE----------R 194
           +G F+  Y F    WKI+RWV +  + L+ +  V+AL +R ANR  +Y+          +
Sbjct: 147 TGDFDMIYDFLKEKWKIVRWVALGVVILEALLFVLALIVRAANRPAEYDSDDELIAPRQQ 206

Query: 195 IVYPEIVRPTAEKRGNPVAA 214
           I  P + RP     G PVA 
Sbjct: 207 IRQPLLNRPPGPATGVPVAG 226


>29983.m003216 conserved hypothetical protein
          Length = 221

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 67/110 (60%)

Query: 75  PVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFMFFNH 134
           P  WFIY  L +G +L VI+C G V A T + CCL  Y + + +LF+ +   +A +F N 
Sbjct: 54  PAPWFIYTFLGLGVTLCVITCVGHVAAETANGCCLYLYMLFVFVLFMLEAGVSADVFLNR 113

Query: 135 NRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALKVIGLVVALYLR 184
           + +KD P D +GSFN    F   N++I +W+ ++ ++++ +  ++AL L+
Sbjct: 114 DWEKDFPKDPTGSFNQFKDFIRSNFEICKWMGLSIVSVQGLSFLLALILK 163


>30204.m001823 conserved hypothetical protein
          Length = 225

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%)

Query: 71  SNRLPVAWFIYLLLVIGASLIVISCFGCVGAATRSSCCLCTYSVLLVLLFIAQLVAAAFM 130
           S +LP  WFIY  + +G  L  I+  GC+ A   + CCLC YS+L  +L + +    AF+
Sbjct: 53  SFKLPAPWFIYSFMGVGIILCCITLIGCIAAEAINGCCLCFYSILKTVLILLEASLVAFI 112

Query: 131 FFNHNRQKDMPNDRSGSFNSTYRFFTLNWKIIRWVIIAALALK 173
             +   +KD+P D +G   S   F   N  I  W+ I  + ++
Sbjct: 113 AIDRRWEKDLPFDPTGELQSLRSFVEENVDICEWIGITVIVIQ 155