Jatropha Genome Database

JcCB0001131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001131.10 - phase: 0 /pseudo
         (114 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008934 mads box protein, putative                              109   3e-25
30138.m003939 mads box protein, putative                               99   5e-22
30147.m014133 mads box protein, putative                               98   8e-22
29804.m001536 mads box protein, putative                               91   8e-20
29596.m000699 mads box protein, putative                               91   1e-19
29908.m005982 mads box protein, putative                               88   7e-19
29648.m001978 mads box protein, putative                               88   9e-19
30221.m002218 mads box protein, putative                               88   1e-18
30170.m013776 mads box protein, putative                               86   3e-18
29907.m000663 mads box protein, putative                               84   2e-17
29782.m000119 Floral homeotic protein DEFICIENS, putative              80   1e-16
29838.m001690 mads box protein, putative                               80   3e-16
30138.m004061 mads box protein, putative                               74   2e-14
29613.m000367 mads box protein, putative                               69   5e-13
30099.m001672 mads box protein, putative                               67   1e-12
30099.m001671 mads box protein, putative                               67   2e-12
29693.m002042 mads box protein, putative                               67   2e-12
29693.m002039 mads box protein, putative                               66   4e-12
27866.m000233 mads box protein, putative                               64   1e-11
28348.m000077 mads box protein, putative                               64   2e-11
29813.m001508 mads box protein, putative                               63   3e-11
28830.m000229 mads box protein, putative                               61   9e-11
29693.m002041 mads box protein, putative                               58   7e-10
29838.m001672 mads box protein, putative                               58   8e-10
29912.m005524 mads box protein, putative                               57   2e-09
29739.m003627 mads box protein, putative                               57   2e-09
30190.m010925 conserved hypothetical protein                           51   1e-07
27893.m000228 mads box protein, putative                               50   2e-07
28180.m000391 mads box protein, putative                               48   9e-07
29653.m000299 mads box protein, putative                               45   8e-06

>30174.m008934 mads box protein, putative
          Length = 244

 Score =  109 bits (272), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 57/59 (96%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGS 59
          MGRG+V L+RIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK+ EFG+
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGN 59


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 98.6 bits (244), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 55/59 (93%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGS 59
          MGRG+V L+RIENKINRQVTFSKRR GLLKKA+E+SVLCDAEVALI+FS++GK+ E+ +
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 98.2 bits (243), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 53/61 (86%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGST 60
          M RGK+ + RIEN  +RQVTFSKRRNGLLKKAYELSVLCDAEVA+IIFS +G++SEF S 
Sbjct: 1  MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFASN 60

Query: 61 E 61
          E
Sbjct: 61 E 61


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 51/60 (85%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGST 60
          MGRGK+V+ RI+N  +RQVTFSKRRNGLLKKA ELS+LCDAEV +IIFSS  K+ ++ ST
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAST 87


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 90.5 bits (223), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 52/60 (86%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGST 60
          MGRGK+V+ RI+N  +RQVTFSKRRNGLLKKA EL++LCDAEV ++IFSS GK+ +F S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 49/57 (85%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEF 57
          MGR K+ ++RIEN  NRQVTFSKRRNGL+KKAYELS+LCD ++ALI+FS  G++S F
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHF 57


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 52/59 (88%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGS 59
          MGRG++ ++RIEN  NRQVT+SKRRNG++KKA E++VLCDAEV+LIIF+S GK+ E+ S
Sbjct: 1  MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCS 59


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/57 (68%), Positives = 49/57 (85%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEF 57
          MGRGK+ ++RIEN+  RQVTFSKRR GLLKK +ELSVLCDA++ LIIFSS GK+ ++
Sbjct: 1  MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQY 57


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/57 (71%), Positives = 49/57 (85%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEF 57
          MGR K+ ++RIEN  NRQVTFSKRRNGL+KKAYELSVLCD +VALI+FS  G++S F
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLF 57


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGS 59
          M RGKV ++RIEN ++RQVTF KRR+GLLKKA ELSVLCDAE+ L IFS+ GK+ +  +
Sbjct: 1  MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLAT 59


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 80.5 bits (197), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 49/58 (84%), Gaps = 1/58 (1%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRG-KVSEF 57
          MGRGK+ +++IEN  NRQVT+SKRRNG+ KKA EL+VLCDA+V+LI+FS+ G K  EF
Sbjct: 1  MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKFHEF 58


>29838.m001690 mads box protein, putative
          Length = 61

 Score = 79.7 bits (195), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGST 60
          M R K+ +++I+N   RQVTFSKRR GL KKAYELS LCDAE+AL++FS+ GK+ E+ S+
Sbjct: 1  MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYASS 60


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 45/57 (78%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEF 57
          MGR K+ ++R+E+  NRQVT+SKRRNG+LKKA ELS+LCD  + L++FS  GK + F
Sbjct: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGKPTLF 57


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 41/61 (67%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGST 60
          +GR K+ +E+I  K + QVTFSKRR GL KKA EL  LC  E+A+I+FS  GK   FG  
Sbjct: 6  LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSFGHP 65

Query: 61 E 61
          E
Sbjct: 66 E 66


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 42/57 (73%)

Query: 2  GRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58
          GR K+ + ++ N+ N QVTFSKRR+GL KKA ELS LC AE+A+I+FS   KV  FG
Sbjct: 7  GRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFG 63


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGST 60
          +GR K+ +E+I  K + QVTFSKRR GL KKA EL  LC  E+A+++FS   K   FG  
Sbjct: 26 LGRQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFGHP 85

Query: 61 E 61
          E
Sbjct: 86 E 86


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 42/57 (73%)

Query: 2  GRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58
          GR K+ ++RIEN+ +R +TFSKRR+G+ KKA EL  LC AEV +++FS  GK   FG
Sbjct: 9  GRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFG 65


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 43/58 (74%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58
          MGR K+ ++ +++  +RQVTFSKRR GL KKA EL+ LC A++A+++FS  GK   FG
Sbjct: 1  MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSFG 58


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 2  GRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGST 60
          GR K+ ++ IE K N QVTFSKRR GL KKA ELS+LC A+VA++ FS   KV  FG  
Sbjct: 13 GRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAFGHP 71


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 44/60 (73%)

Query: 2  GRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGSTE 61
          GR K+ ++++EN   R VTFSKR++G+ KKA ELS LC AE+A+++FS  GKV   G+ +
Sbjct: 17 GRQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVFSCGNPD 76


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 42/55 (76%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVS 55
          MGR K+ ++++EN   RQ T+ KR++G++KKA ELS+LCD ++ L++FS  GK S
Sbjct: 1  MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGKPS 55


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 37/58 (63%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58
          MGR K  +  I+ +  RQV+FSKRR G+ KKA EL  LC  E A++IFS  GK   FG
Sbjct: 1  MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAFTFG 58


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 58.2 bits (139), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 2  GRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFG 58
          GR K+ +++IEN+ +R +TFSKRR+G+ KKA EL  L  AE+A +++S  GK   F 
Sbjct: 12 GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFA 68


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 40/58 (68%)

Query: 2  GRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEFGS 59
          GR ++ + +I  + NR VTFSKRR G+ KKA ELS LC AE+++I+FS   +   FG+
Sbjct: 8  GRQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFGN 65


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSR 51
          MGRGK+ +E I N+ +R +T+ KR+ GL KK  E  +LCD +  +IIFS +
Sbjct: 1  MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFSPK 51


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKVSEF 57
          MGR K+ + R+E+   RQV +SKR+ G+LKK  EL+ LCD ++ LI+FS  GK S +
Sbjct: 1  MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGKPSLY 57


>30190.m010925 conserved hypothetical protein
          Length = 386

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 1  MGRGKVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK 53
          MG  ++ +E IE +  R +T+ KR+  L+KK  E S+LC  E  LIIF+ + K
Sbjct: 1  MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHK 53


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 40/58 (68%), Gaps = 4/58 (6%)

Query: 5  KVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS----SRGKVSEFG 58
          K  ++++E++  R V+F+KRRNGL  KA EL +LCDA++A+++ S     + KV  FG
Sbjct: 6  KRPMKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSKPKRKVYSFG 63


>28180.m000391 mads box protein, putative
          Length = 328

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 3/56 (5%)

Query: 5  KVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFS--SRGKVSEFG 58
          K+ +++ E K  R V+F+KRR GL  KA EL +LCDA++AL++ S  SR KV  FG
Sbjct: 6  KLPMKKRETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSSPCSR-KVYSFG 60


>29653.m000299 mads box protein, putative
          Length = 166

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 5  KVVLERIE-NKINRQVTFSKRRNGLLKKAYELSVL--CDAEVALIIFSSRGKVSEFG 58
          K+ +++I+ NK    VTFSKRR GL KKA E   L    AEVALI FS  G+   FG
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSFG 85