Jatropha Genome Database

JcCB0001101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001101.20 + phase: 0 
         (78 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29945.m000087 Ubiquinol-cytochrome c reductase complex ubiquinon...    86   5e-18

>29945.m000087 Ubiquinol-cytochrome c reductase complex
          ubiquinone-binding protein QP-C, putative
          Length = 92

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 42/44 (95%)

Query: 8  MKAVVYALSPFQQKIMPGLWKDLPNKIHHKVSENWISATLLLTP 51
          MKAV+Y+LSPFQQK+M GLWKDLP+KIHHKVSENWISATLLL P
Sbjct: 1  MKAVIYSLSPFQQKVMTGLWKDLPDKIHHKVSENWISATLLLAP 44