Jatropha Genome Database

JcCB0001101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0001101.10 + phase: 0 /partial
         (281 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29945.m000086 nucleic acid binding protein, putative                  511   e-145
27955.m000377 conserved hypothetical protein                          439   e-124
28128.m000156 nucleic acid binding protein, putative                  266   8e-72
29765.m000727 nucleic acid binding protein, putative                  261   3e-70
30147.m014250 zinc finger protein, putative                           102   3e-22

>29945.m000086 nucleic acid binding protein, putative
          Length = 274

 Score =  511 bits (1315), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 247/274 (90%), Positives = 263/274 (95%)

Query: 8   NFSPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILRVSGMLP 67
           NFSPAR LSPHIRTTPDV+SGQYLTELLEEHQKLGPF +VLPICSRLLNQEILRVSGM+P
Sbjct: 1   NFSPARALSPHIRTTPDVDSGQYLTELLEEHQKLGPFNQVLPICSRLLNQEILRVSGMIP 60

Query: 68  NQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGSQGINMDWQAAPASPS 127
           NQG SDFDR QRGSL+ MASS+IL +NRGT  +GWNGL  ERLG+QG+N+DWQAAPASPS
Sbjct: 61  NQGFSDFDRLQRGSLSPMASSEILASNRGTSIMGWNGLPQERLGAQGMNVDWQAAPASPS 120

Query: 128 AYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKEE 187
           +YIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKE+
Sbjct: 121 SYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKED 180

Query: 188 SLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKRQQLRE 247
           SLRGRPGYEHLSDPLHILIE ELPVNI+DM+LRQA+EIIEELLKPVDESQDIYKRQQLRE
Sbjct: 181 SLRGRPGYEHLSDPLHILIEAELPVNIVDMRLRQAREIIEELLKPVDESQDIYKRQQLRE 240

Query: 248 LAMLNSNYREESPRPSGSISPFTSSGMKRAKTGQ 281
           LAMLNSNYREESPRPSGS+SPFTSSGMKRAKTGQ
Sbjct: 241 LAMLNSNYREESPRPSGSVSPFTSSGMKRAKTGQ 274


>27955.m000377 conserved hypothetical protein
          Length = 680

 Score =  439 bits (1129), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/280 (76%), Positives = 242/280 (86%), Gaps = 2/280 (0%)

Query: 1   MSGLYAQNFSPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEIL 60
           MSGLY  NFSPAR  SP IR+TPDV+S QYL+ELL EHQKLGPF +VLPICSRLLNQEI 
Sbjct: 1   MSGLYNPNFSPARAASPQIRSTPDVDS-QYLSELLAEHQKLGPFMQVLPICSRLLNQEIF 59

Query: 61  RVSGMLPNQGLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERL-GSQGINMDW 119
           RVSGM+ NQG  DFDR +  S + MASS+++ N  GTG   WNGL  ERL G  G+ MDW
Sbjct: 60  RVSGMMSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGSWNGLPQERLSGPPGMTMDW 119

Query: 120 QAAPASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGS 179
           Q+APASPS+Y VK+ILRL+IPVD+YPNFNFVGRLLGPRGNSLKRVEA+TGCRVYIRGKGS
Sbjct: 120 QSAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 179

Query: 180 IKDPEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDI 239
           IKDP+KEE LRGRPGYEHL+DPLHILIE +LP NI++M+LRQAQEII ELLKPVDESQD 
Sbjct: 180 IKDPDKEEKLRGRPGYEHLNDPLHILIEADLPANIVEMRLRQAQEIIGELLKPVDESQDF 239

Query: 240 YKRQQLRELAMLNSNYREESPRPSGSISPFTSSGMKRAKT 279
            KRQQLRELAMLNSN+RE+SP PSGS+SPF +SGMKRAKT
Sbjct: 240 IKRQQLRELAMLNSNFREDSPGPSGSVSPFNTSGMKRAKT 279


>28128.m000156 nucleic acid binding protein, putative
          Length = 300

 Score =  266 bits (680), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 147/259 (56%), Positives = 183/259 (70%), Gaps = 7/259 (2%)

Query: 25  VESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILRVSGMLPNQGLSDFDRPQRGSLNL 84
           VE  +YL+ELL E  KL PF  VLP   RLL+QEILRV+ +L N  +      +  S   
Sbjct: 43  VEQEKYLSELLAERHKLSPFMPVLPHTYRLLSQEILRVTTLLGNASVLGQSGLEHASP-- 100

Query: 85  MASSDILPNNRGTGFLGWNG-LQNERLG--SQGINMDWQAAPASPSAYIVKKILRLDIPV 141
           +AS  +  N  G    GW    Q+E  G        +W ++  S S  IVK+ +R+DIP+
Sbjct: 101 LASGGMFSNG-GADANGWASRFQSEMSGLIQPSSAQNWLSSQGSSSGLIVKRTIRVDIPI 159

Query: 142 DSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKEESLRGRPGYEHLSDP 201
           + YP++NFVGRLLGPRGNSLKRVEAST CRV IRG+GSIKDP +EE +RG+PGYEHL++P
Sbjct: 160 ERYPSYNFVGRLLGPRGNSLKRVEASTECRVLIRGRGSIKDPAREEMMRGKPGYEHLNEP 219

Query: 202 LHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSNYREESPR 261
           LHIL+E ELPV I+D ++ QA+EI+E+LLKPVDESQD YK+QQLRELAMLN   REE   
Sbjct: 220 LHILVEAELPVEIVDARIAQAREILEDLLKPVDESQDFYKKQQLRELAMLNGTLREEGSP 279

Query: 262 PSGSISPFTSS-GMKRAKT 279
            SGS+SPF +S GMKRAKT
Sbjct: 280 MSGSVSPFHNSLGMKRAKT 298


>29765.m000727 nucleic acid binding protein, putative
          Length = 295

 Score =  261 bits (667), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 147/281 (52%), Positives = 183/281 (65%), Gaps = 15/281 (5%)

Query: 10  SPARTLSPHIRTTPDVESGQYLTELLEEHQKLGPFARVLPICSRLLNQEILRVSGMLPNQ 69
           S A   SPH  ++   +  +YL ELL E QKL PF +VLP+CSRLLNQEI RVSG    Q
Sbjct: 17  SGAHQASPHRPSSLSSDRERYLAELLAERQKLVPFIQVLPLCSRLLNQEIRRVSGF--TQ 74

Query: 70  GLSDFDRPQRGSLNLMASSDILPNNRGTGFLGWNGLQNERLGS-------QGINMDWQAA 122
           G  D +R +  S           N R      W  +  E  G        Q  +M W   
Sbjct: 75  GFVDHERYEHESPYRSLGQQT--NGRPMDLEAWPRMPTEENGHLQRMASFQAASMGWPGV 132

Query: 123 PASPSAYIVKKILRLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKD 182
           P  P+  ++KK++RLD+PVD YP++NFVGR+LGPRGNSLKRVEA T CRVYIRGKGS+KD
Sbjct: 133 PGIPTTPVIKKVIRLDVPVDDYPSYNFVGRILGPRGNSLKRVEAMTECRVYIRGKGSVKD 192

Query: 183 PEKEESLRGRPGYEHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKR 242
             KEE L+ +PGYEHL++PLH+L+E E P +I+D ++  A  I++ LLKPVDES D YK+
Sbjct: 193 SVKEEKLKDKPGYEHLNEPLHVLVEAEFPEDIVDARVEHAVTILQSLLKPVDESLDHYKK 252

Query: 243 QQLRELAMLNSNYREE----SPRPSGSISPFTSSGMKRAKT 279
           QQLRELAMLN   REE    SP  S S+SPF ++GMKRAKT
Sbjct: 253 QQLRELAMLNGTLREESPSMSPSMSPSMSPFNTAGMKRAKT 293


>30147.m014250 zinc finger protein, putative
          Length = 798

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 6/123 (4%)

Query: 136 RLDIPVDSYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPEKEESLRGRPGY 195
           +L IP+  YP +NF+G ++GPRGN+ KR+E  TG ++ IRGKGS+K+   ++    +P  
Sbjct: 259 KLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDP 318

Query: 196 EHLSDPLHILIEGELPVNIIDMQLRQAQEIIEELLKPVDESQDIYKRQQLRELAMLNSNY 255
               D LH+L+E E         L  A  ++E+LL+PVDE  + +KRQQLRELA LN   
Sbjct: 319 SENED-LHVLVEAE-----TQEALDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTI 372

Query: 256 REE 258
           R+E
Sbjct: 373 RDE 375