Jatropha Genome Database

JcCB0000571.50
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.50 - phase: 0 /pseudo/partial
         (181 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29716.m000300 conserved hypothetical protein                          100   3e-22
27961.m000093 conserved hypothetical protein                           65   2e-11
29806.m000946 conserved hypothetical protein                           64   4e-11
28152.m000887 conserved hypothetical protein                           58   2e-09
27752.m000045 conserved hypothetical protein                           53   8e-08
29642.m000276 conserved hypothetical protein                           49   1e-06
29642.m000277 conserved hypothetical protein                           49   1e-06

>29716.m000300 conserved hypothetical protein
          Length = 186

 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 6/139 (4%)

Query: 6   CPGFVNGAMHWI-TYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVIS-SCDFKVHVFG 63
            P +VN A HWI +Y+ +    R   I+VFD++DEVF EI+LP+SLV +   +  V  FG
Sbjct: 6   VPVYVNNAFHWIMSYRMEGVGVRSL-ILVFDVKDEVFREIILPESLVNAIETEVDVKRFG 64

Query: 64  ESSITVIHK---KDKKMSVVCVMKNYGVVASWVMLGTVGKDWRGKLRVLGFMSNGDVFLQ 120
           +SSI VI     ++   S + VMK YGV+ SWV    VGK  +GK  VLGF  NG + ++
Sbjct: 65  DSSIAVIFSSVPREFHNSQIWVMKEYGVIESWVEYAKVGKRRKGKSTVLGFRKNGQLLVK 124

Query: 121 FHRGGIASQNIESRRLKNL 139
           F RG IA  N E++ ++N+
Sbjct: 125 FFRGQIALINQENKCIQNI 143


>27961.m000093 conserved hypothetical protein
          Length = 176

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 27/124 (21%)

Query: 5   SCPGFVNGAMHW-ITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFG 63
           + P   N A+HW +  + KN        +VF    +  G + +         +  V  FG
Sbjct: 70  ATPALSNDALHWPVEVEGKN--------LVF----KCLGSVKV--------TELTVKAFG 109

Query: 64  ESSITVIHKKDKKM---SVVCVMKNYGVVASWVMLGTVGKDWRGKLRVLGFMSNGDVFLQ 120
           ESSI VI++ D      S + VMK +G   +W  L TVGK WRG  +VL F +NG+V +Q
Sbjct: 110 ESSIVVIYQNDWDHPYESDIWVMKEHG---AWTKLATVGKRWRGSSKVLEFRNNGEVLVQ 166

Query: 121 FHRG 124
           F+RG
Sbjct: 167 FYRG 170


>29806.m000946 conserved hypothetical protein
          Length = 371

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 14/143 (9%)

Query: 8   GFVNGAMHWITYK-SKNNNEREFFIMVFDLRDEVFGEIMLPQSLV-ISSCDFKVHVFGES 65
            + NG  HW+     K  +  +  +  FDL DEVF E+M P  L  ++     + V+GES
Sbjct: 205 AYSNGVFHWLARAPGKEGSPDKLTLASFDLGDEVFREMMFPDDLAQVNENHLSLVVYGES 264

Query: 66  SITVIH---KKDK--------KMSVVCVMKNYGVVASWVMLGTVG-KDWRGKLRVLGFMS 113
              + H   K D         +   + V+K +G   SW    T G +D+ G +RVL F  
Sbjct: 265 LALLQHLSWKSDDFSWSLGYYESCCIWVLKKHGEGRSWSKQYTFGMQDYGGLVRVLSFRK 324

Query: 114 NGDVFLQFHRGGIASQNIESRRL 136
           NG+V LQ     +AS + E+ R+
Sbjct: 325 NGEVLLQIRSSELASYDPETNRV 347


>28152.m000887 conserved hypothetical protein
          Length = 242

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 9   FVNGAMHWITYKSKNNNE--REFFIMVFDLRDEVFGEIMLPQSLV-ISSCDFKVHVFGES 65
           F+NGA+HWI Y  ++     R+  +++FD+  EVF E+ LP S+  +S  D  V   G+ 
Sbjct: 68  FLNGAVHWIGYNPRHEGSDFRDLSMVLFDMDKEVFDEMKLPDSVCGLSVLDLSVVASGKV 127

Query: 66  SITVIHKKDKKMSVV-------CVMKNYGVVASWVMLGTVGKDWRGKLR-VLGFMSNGDV 117
              V + +  +   +        VMK YG V SW    T+  D +G +R  LG  +NG +
Sbjct: 128 LSLVQYNRHTRSQWIQYGSCSFWVMKEYGKVESWSKQFTI--DLQGGVRKSLGLGNNGQM 185

Query: 118 FLQFHRGGIASQNIESRRLKNLIPAVKYTHLIFMEETQIKCFQLL 162
            L    G + S + +++   +L   ++     F  E  I+  +LL
Sbjct: 186 LLVASNGELVSYDSQNQETSHL--GIQGIANSFHLEAYIETLELL 228


>27752.m000045 conserved hypothetical protein
          Length = 383

 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 22/139 (15%)

Query: 9   FVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSIT 68
           +VNG +HW+ +  +    R+  ++ FDL DE F E+ LP S  I   D+ + V  +    
Sbjct: 217 YVNGRLHWVNWPVRYRPGRK--LISFDLEDEKFREVPLPGSDGIKWGDYMLVVIRDCLSA 274

Query: 69  VIHKKDKKMSVVCVMKNYGVVASWVMLGTVG------------------KDWRGKL-RVL 109
            +++       V VMK+YG+  SW+   ++G                  K +R    R+L
Sbjct: 275 AVYRNYGSFE-VWVMKDYGLKESWIKEFSIGVYLPKGLEQKIDPSFRVSKFYRRAFTRIL 333

Query: 110 GFMSNGDVFLQFHRGGIAS 128
             + NG++ L++ R  + S
Sbjct: 334 CVLKNGEILLEYGRRALVS 352


>29642.m000276 conserved hypothetical protein
          Length = 410

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 26/152 (17%)

Query: 10  VNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISS-CDFKVHVFGESSIT 68
           VNG +HW++ + +N + R   ++ FDL DE F E+  P        C     + G  S  
Sbjct: 237 VNGRLHWLSCRYRNQSLRR--LISFDLADEQFREVPCPVGASFGRHCSHLATLRGCLSGV 294

Query: 69  VIHKKDKKMSVVCVMKNYGVVASWVMLGTVGKDWRGKL--------------------RV 108
           V   +  +   + VMK YGV  SWV   T+G     +L                    +V
Sbjct: 295 V---QGFRRLYIWVMKEYGVKESWVKEFTIGVKLPRELEPYPNQSINLQEFHLPLSQTKV 351

Query: 109 LGFMSNGDVFLQFHRGGIASQNIESRRLKNLI 140
           L  ++NG++ L+F  G +   + +S   K LI
Sbjct: 352 LCLLNNGEILLEFRCGTLVCYDTKSGAFKELI 383


>29642.m000277 conserved hypothetical protein
          Length = 263

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 23/134 (17%)

Query: 8   GFVNGAMHWITYKSKNNNEREFFIMVFDLRDEVFGEIMLPQSLVISSCDFKVHVFGESSI 67
             VNG +HW++   + N  R   ++  DL DE F E+  P    +S C++ + V      
Sbjct: 88  ALVNGRLHWVSRPRRYNPARR--LVSLDLVDEQFREVPKPDCGGLSRCNYHLVVLKGCLS 145

Query: 68  TVIHKKDKKMSVVCVMKNYGVVASWVMLGTVG---------------KDWRGK-----LR 107
             ++    ++ +   MK Y V  SWV    VG               K W+       +R
Sbjct: 146 AAVYCNYGRLEI-WTMKEYNVKESWVKQYIVGTHMPKGLKQNLERPTKIWKNASNGRVVR 204

Query: 108 VLGFMSNGDVFLQF 121
           +LG + NG++ L++
Sbjct: 205 ILGLLKNGELLLEY 218