Jatropha Genome Database

JcCB0000571.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.40 - phase: 0 
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29716.m000300 conserved hypothetical protein                           82   4e-17
27961.m000093 conserved hypothetical protein                           71   9e-14
29806.m000946 conserved hypothetical protein                           51   1e-07

>29716.m000300 conserved hypothetical protein
          Length = 186

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 9/101 (8%)

Query: 1   MLPECLVNS--SALDVASFGESSIAVI-----RQLYDKKSDIWVMKKYGEVASWLMLGTM 53
           +LPE LVN+  + +DV  FG+SSIAVI     R+ ++  S IWVMK+YG + SW+    +
Sbjct: 45  ILPESLVNAIETEVDVKRFGDSSIAVIFSSVPREFHN--SQIWVMKEYGVIESWVEYAKV 102

Query: 54  GKCWRGKSRVLGFRSEGDVFLHFHRGGIASRNVESQRVENL 94
           GK  +GKS VLGFR  G + + F RG IA  N E++ ++N+
Sbjct: 103 GKRRKGKSTVLGFRKNGQLLVKFFRGQIALINQENKCIQNI 143


>27961.m000093 conserved hypothetical protein
          Length = 176

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 8/81 (9%)

Query: 4   ECL--VNSSALDVASFGESSIAVIRQL---YDKKSDIWVMKKYGEVASWLMLGTMGKCWR 58
           +CL  V  + L V +FGESSI VI Q    +  +SDIWVMK++G   +W  L T+GK WR
Sbjct: 93  KCLGSVKVTELTVKAFGESSIVVIYQNDWDHPYESDIWVMKEHG---AWTKLATVGKRWR 149

Query: 59  GKSRVLGFRSEGDVFLHFHRG 79
           G S+VL FR+ G+V + F+RG
Sbjct: 150 GSSKVLEFRNNGEVLVQFYRG 170


>29806.m000946 conserved hypothetical protein
          Length = 371

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 16/106 (15%)

Query: 1   MLPECL--VNSSALDVASFGESSIAVIRQLYDKKSD------------IWVMKKYGEVAS 46
           M P+ L  VN + L +  +GES +A+++ L  K  D            IWV+KK+GE  S
Sbjct: 243 MFPDDLAQVNENHLSLVVYGES-LALLQHLSWKSDDFSWSLGYYESCCIWVLKKHGEGRS 301

Query: 47  WLMLGTMG-KCWRGKSRVLGFRSEGDVFLHFHRGGIASRNVESQRV 91
           W    T G + + G  RVL FR  G+V L      +AS + E+ RV
Sbjct: 302 WSKQYTFGMQDYGGLVRVLSFRKNGEVLLQIRSSELASYDPETNRV 347