Jatropha Genome Database

JcCB0000571.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0000571.30 - phase: 2 /pseudo/partial
         (178 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27961.m000093 conserved hypothetical protein                           77   4e-15
29716.m000300 conserved hypothetical protein                           49   1e-06

>27961.m000093 conserved hypothetical protein
          Length = 176

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 64/103 (62%), Gaps = 6/103 (5%)

Query: 50  LRHLNSNSWKDITHIYPKYGIDQHFVPAFVNIALHWAVTDWKRDERRKALVKAYSSDLTV 109
           L  LNSNSWK I+++  K  ++++  PA  N ALHW V    ++   K L     ++LTV
Sbjct: 46  LYSLNSNSWKKISNLPRKCSVNEYATPALSNDALHWPVEVEGKNLVFKCLGSVKVTELTV 105

Query: 110 KVFGKLSIVVIHRSD---SYESHIWLMKEYGVVASWVKLVTLA 149
           K FG+ SIVVI+++D    YES IW+MKE+G   +W KL T+ 
Sbjct: 106 KAFGESSIVVIYQNDWDHPYESDIWVMKEHG---AWTKLATVG 145


>29716.m000300 conserved hypothetical protein
          Length = 186

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 23/98 (23%)

Query: 75  VPAFVNIALHWAVT---------------DWKRDERRK-----ALVKAYSSDLTVKVFGK 114
           VP +VN A HW ++               D K +  R+     +LV A  +++ VK FG 
Sbjct: 6   VPVYVNNAFHWIMSYRMEGVGVRSLILVFDVKDEVFREIILPESLVNAIETEVDVKRFGD 65

Query: 115 LSIVVIHRS---DSYESHIWLMKEYGVVASWVKLVTLA 149
            SI VI  S   + + S IW+MKEYGV+ SWV+   + 
Sbjct: 66  SSIAVIFSSVPREFHNSQIWVMKEYGVIESWVEYAKVG 103