Jatropha Genome Database

JcCA0317991.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317991.20 + phase: 0 
         (329 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003680 DNA repair protein rad51, putative                      533   e-152
29844.m003214 meiotic recombination protein dmc1, putative            307   4e-84
30174.m008856 DNA repair and recombination protein radA, putative      96   3e-20
29582.m000250 X-ray repair cross complementing protein 3, xrcc3,...    76   2e-14
29788.m000324 DNA repair and recombination protein radB, putative      58   5e-09

>29739.m003680 DNA repair protein rad51, putative
          Length = 294

 Score =  533 bits (1372), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 269/305 (88%), Positives = 271/305 (88%), Gaps = 33/305 (10%)

Query: 25  GPFPVEQLQESGIAALDIKKLKDAGLCTVESVAYSPRKELLQIKGISDAKVDKIIEAASK 84
           GPFPVEQLQESGIAALD+KKLKDAGLCTVESVAYSPRKELLQIKGIS+AKVDKIIEAASK
Sbjct: 23  GPFPVEQLQESGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAASK 82

Query: 85  LVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTL 144
           LVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTL
Sbjct: 83  LVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTL 142

Query: 145 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ 204
           CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ
Sbjct: 143 CVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQ 202

Query: 205 SRLLLEAASMMVETRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQVD 264
           SRLLLEAASMM                                 FGVAVVITNQVVAQVD
Sbjct: 203 SRLLLEAASMM---------------------------------FGVAVVITNQVVAQVD 229

Query: 265 GSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGV 324
           GSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGV
Sbjct: 230 GSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAEGV 289

Query: 325 TDVKD 329
           TD KD
Sbjct: 290 TDAKD 294


>29844.m003214 meiotic recombination protein dmc1, putative
          Length = 353

 Score =  307 bits (787), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 160/324 (49%), Positives = 213/324 (65%), Gaps = 24/324 (7%)

Query: 29  VEQLQESGIAALDIKKLKDAGLCTVESVAYSPRKELLQIKGISDAKVDKIIEAASKLVPL 88
           +++L   GI A D+KKL+DAG+ T   +    +K L  IKG+S+AKVDKI EAA K+V  
Sbjct: 31  IDKLIAQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKIVNF 90

Query: 89  GFTSASQLHAQRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTC 148
           G+ + S    +R ++++IT+GS+ LD++L GGIET  ITE +GEFRSGKTQL HTLCV+ 
Sbjct: 91  GYITGSDALLRRKQVVRITTGSQALDELLGGGIETLCITEAFGEFRSGKTQLAHTLCVST 150

Query: 149 QLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNGADVLENVAYARAYNTDHQSRLL 208
           QLP +  GG GK  YID EGTFRP R++ IA+RFG++   VL+N+ YARAY  +HQ  LL
Sbjct: 151 QLPTNMRGGNGKVAYIDTEGTFRPDRIVPIAERFGMDPGAVLDNIIYARAYTYEHQYNLL 210

Query: 209 LEAASMMVET--------------RTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVV 254
           L  A+ M E               R DF+GRGEL+ RQ  LA+ L  L K+A+EF VAV 
Sbjct: 211 LGLAAKMSEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVY 270

Query: 255 ITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAE 314
           +TNQV+A   G    + P+ KP GG+++AHA+T RL  RKG+GE+R+CKV  +P L EAE
Sbjct: 271 MTNQVIADPGGGVFISDPK-KPAGGHVLAHAATIRLMFRKGKGEQRVCKVFDAPNLPEAE 329

Query: 315 A---------RFQISAEGVTDVKD 329
           A          FQI+  G+ D KD
Sbjct: 330 AISLVTVIEHVFQITPGGIADAKD 353


>30174.m008856 DNA repair and recombination protein radA, putative
          Length = 346

 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 137/304 (45%), Gaps = 56/304 (18%)

Query: 70  ISDAKVDKIIEAASKLVPL-----------GFTSASQLHAQRLEIIQITSGSRELDKILE 118
           ISD++  +I++ AS+   L           G  +A ++  +   + +IT+   +LD IL 
Sbjct: 41  ISDSEALEILKVASRNSRLDGMEGCHAVINGAQNAWEMLHEESSLTRITTSCADLDNILG 100

Query: 119 GGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQI 178
           GGI    +TEI G    GKTQL   L V  Q+P   GG  GKA+YID EG+F  +R+LQ+
Sbjct: 101 GGITCKEVTEIGGLPGIGKTQLGIQLAVNVQIPPYCGGLGGKAVYIDTEGSFMVERVLQV 160

Query: 179 AD----------RF----------GLNGADVLENVAYARA---------------YNTDH 203
           A+          RF               D+LEN+ Y R                + ++H
Sbjct: 161 AEASVEDMLEYSRFLRRDLQTCQVATQSKDILENIYYFRVCSYTEQVALVNYLEKFISEH 220

Query: 204 QSRLLLEAASMMVETRTDFSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQ- 262
           +   ++   S+    R DF    +L+ R   L+     L K+A  F +AVV+ NQV  + 
Sbjct: 221 RDVKVVIIDSITFHFRQDFD---DLALRTRVLSGMALKLMKIAKSFSLAVVLLNQVTTKH 277

Query: 263 VDGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKVISSPCLAEAEARFQISAE 322
            +GS      Q+    G   +H+ T R+ L      ER   +  SP L  A A + ++  
Sbjct: 278 TEGSF-----QLGLALGESWSHSCTNRIIL-YWNSNERYAYIDKSPSLKSATAPYSVTRG 331

Query: 323 GVTD 326
           G+ +
Sbjct: 332 GIRN 335


>29582.m000250 X-ray repair cross complementing protein 3, xrcc3,
           putative
          Length = 301

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 110/288 (38%), Gaps = 62/288 (21%)

Query: 99  QRLEIIQITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGE 158
           Q +   + T G   LD+ L GGI   SITEI  E  +GKTQLC  L +  QLPL  GG  
Sbjct: 9   QPIPTQKCTLGCPILDRCLNGGIPCNSITEIVAESGTGKTQLCLQLSLYAQLPLSLGGLS 68

Query: 159 GKAMYIDAEGTFRPQRLLQIADRFGLNGADVL----------------ENVAYARAYNTD 202
             ++Y+  E  F  +RL Q++  F      +                 +N+      + D
Sbjct: 69  ASSLYLHTEFPFPFRRLHQLSHSFQSQHPQIFINNNNNDTINNYDNPCDNIFVHSVRSAD 128

Query: 203 HQSRLLLEAASMMVETRTDFSGR-------------------GELSARQMHLAKFLRSLQ 243
           +   ++ +  S +V ++T    R                    +L  R     K    L+
Sbjct: 129 YLFDIMPKIESFLVYSKTHLPVRLIVIDSVAALFRSEFENTATDLKRRSALFFKISAKLR 188

Query: 244 KLADEFGVAVVITNQVVAQVD-------------GSAIFAGPQIKPIGGNIMAHASTTRL 290
            LA  F +AVV++NQVV  V              GS   +G ++ P  G   A+   +RL
Sbjct: 189 ALAWRFNLAVVVSNQVVDFVGSGDGLNGARIGDLGSLYSSGRRVCPALGLAWANCVNSRL 248

Query: 291 ALRKGRG--------------EERICKVISSPCLAEAEARFQISAEGV 324
            L +                   R   V+ +P L  +   F I  EGV
Sbjct: 249 FLSRDENGMVDGAESGSFCSQTRRRLHVVFAPHLPYSSCEFVIRREGV 296


>29788.m000324 DNA repair and recombination protein radB, putative
          Length = 315

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 40/239 (16%)

Query: 106 ITSGSRELDKILEGGIETGSITEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYID 165
           +++G   +D +L GG+  G +TE+ G   SGKTQ+C  L V   +        G+ +++D
Sbjct: 90  LSTGFDGIDSLLGGGVREGQLTELVGSSSSGKTQVC--LQVAANVAKQH---MGRVIFVD 144

Query: 166 AEGTFRPQRLLQIADRFGLNGAD--VLENVAYARA------YNTDHQSRLLLEA------ 211
              +F P+R+ Q   R   +  +  V+ N+           ++  HQ  + L +      
Sbjct: 145 TGNSFSPRRIEQFVGRISGSALNQTVMSNILCHSVFDIFSMFDVLHQLEISLRSQGHSGD 204

Query: 212 ---ASMMVETRTD-----FSGRGELSARQMHLAKFLRSLQKLADEFGVAVVITNQVVAQV 263
               S++V++ +        G G      M  A  L  L+KLA E  +AV++TN +VA  
Sbjct: 205 FKVQSLIVDSISSLITPILGGGGSQGHALMTSAGIL--LKKLAHEHNIAVLVTNHMVAG- 261

Query: 264 DGSAIFAGPQIKPIGGNIMAHASTTRLALRKGRGEERICKV--ISSPCLAEAE-ARFQI 319
                  G   KP  G         RL L + +G + +C V  +  P  A  + ARF +
Sbjct: 262 ------EGGNFKPALGESWKSIPHVRLLLSRDQG-KNVCNVTILKHPSQASGKAARFTV 313