Jatropha Genome Database

JcCA0317991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317991.10 - phase: 0 /pseudo/partial
         (298 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003712 conserved hypothetical protein                          380   e-106
30174.m008984 conserved hypothetical protein                          170   8e-43

>29739.m003712 conserved hypothetical protein
          Length = 295

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/263 (73%), Positives = 214/263 (81%), Gaps = 2/263 (0%)

Query: 1   MGTGDEVVEIDXXXXXXXXXXXXXXXXXXXXADDEAVLYTASFEEMEEKFIKYQTAQWVM 60
           MGT DEV EID                     DD+ VLYTASF EMEEKF+KYQTAQWV+
Sbjct: 1   MGTVDEVAEIDNLERGLLSESCGGNEKSEG-TDDDTVLYTASFREMEEKFVKYQTAQWVI 59

Query: 61  YSLLLILAWGIGLFMLLYLPVRRYILRKDIQSRKLYLTPNAIVYKVTKPVAFPCFGVLKK 120
           YSLLLILAWG+GLFMLLYLPVRRYILRKDIQSRKL+LTPNAIVYKVTKPVAFPCFGVL K
Sbjct: 60  YSLLLILAWGMGLFMLLYLPVRRYILRKDIQSRKLFLTPNAIVYKVTKPVAFPCFGVLHK 119

Query: 121 EKHILLPSVADIVIEQGYLQSLFGVCSLRIENVGVRRPPSDDVQIQGVANPNAFKKAVLT 180
           EKH+LLPSVADI+IEQGYLQSLFGV S+RIEN GVRRPPSDDVQIQG+ANP AFKKAVLT
Sbjct: 120 EKHVLLPSVADIIIEQGYLQSLFGVYSVRIENAGVRRPPSDDVQIQGIANPRAFKKAVLT 179

Query: 181 RLSYMRNEFGSRQVSAIEDIPSLRIGHXXXXXXXXXXXLRHDLLPNSGDILLLQKLEEVG 240
           +LS++++E  SRQVS IEDIPSLR+GH            RHDL+P SGD++LLQKLEEVG
Sbjct: 180 QLSHIKSEIVSRQVSTIEDIPSLRLGHSSSPWMSPMKPQRHDLIPGSGDLVLLQKLEEVG 239

Query: 241 SSMKRVQSLIEEQ-HSQSLEPTG 262
           +S+KRVQ+LIEE+ HSQS E  G
Sbjct: 240 NSVKRVQTLIEEKHHSQSSELMG 262


>30174.m008984 conserved hypothetical protein
          Length = 282

 Score =  170 bits (430), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 148/240 (61%), Gaps = 18/240 (7%)

Query: 33  DDEAVLYTASFEEMEEKFIKYQTAQWVMYSLLLILAWGIGLFMLLYLPVRRYILRKDIQS 92
           + E +LYTASFEE+ +  +KY T  WV  SLLL+LAWG+G+ MLLYLP+RRY+ R++I S
Sbjct: 37  ESEQILYTASFEELGKSTLKYDTVIWVSISLLLVLAWGVGILMLLYLPIRRYVFRQEISS 96

Query: 93  RKLYLTPNAIVYKVTKPVAFPCFGVLKKEKHILLPSVADIVIEQGYLQSLFGVCSLRIEN 152
           RKLY+TPN IVYKV++P   P +GV   +K + L  V DI+IEQG+LQS++G+ + R+E+
Sbjct: 97  RKLYVTPNEIVYKVSRPSFIPFWGVTVIDKRVPLSFVIDIIIEQGWLQSIYGIHTFRVES 156

Query: 153 VG-VRRPPSDDVQIQGVANPNAFKKAVLTRLSYMRNEFG--------SRQVSAIEDIPSL 203
           +   +  P D++Q+QGV +P+  +K ++T  +    + G        + +  ++  + SL
Sbjct: 157 IAHGKAAPVDELQVQGVVSPSLLRKVIITEAAKNIRDDGRGWRPAALTGEGDSMSRMGSL 216

Query: 204 RIGHXXXXXXXXXXXLRH-----DLLPNS---GDILLLQKLEEVGSSMKRVQSLIEEQHS 255
             G            + +      L P S   G++ LL KLEEV  S+K+++ LIE+  +
Sbjct: 217 GEGPAAFKSPSKTWKVMNSPRYASLEPRSAIPGEV-LLNKLEEVSKSVKKIELLIEKSQT 275