Jatropha Genome Database

JcCA0317741.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.40 - phase: 0 /partial
         (65 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013806 transcription factor, putative                          134   8e-33
30162.m001290 transcription factor, putative                          114   8e-27
29682.m000576 transcription factor, putative                          110   2e-25

>30170.m013806 transcription factor, putative
          Length = 449

 Score =  134 bits (337), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/65 (98%), Positives = 65/65 (100%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVITGQPEQLDNPWGITPFKKV+SLPSRIDPLQTSAVVSLHGRLYVRVPF
Sbjct: 385 VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVISLPSRIDPLQTSAVVSLHGRLYVRVPF 444

Query: 61  ERGSA 65
           ERGSA
Sbjct: 445 ERGSA 449


>30162.m001290 transcription factor, putative
          Length = 515

 Score =  114 bits (286), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 58/61 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           V VQSDPAGRL+I+G PEQ+DNPWG+TPFKKVVSLPSRIDP QTSAVV+LHG+L+VRVPF
Sbjct: 451 VHVQSDPAGRLIISGNPEQVDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 510

Query: 61  E 61
           E
Sbjct: 511 E 511


>29682.m000576 transcription factor, putative
          Length = 656

 Score =  110 bits (274), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 59/62 (95%)

Query: 1   VRVQSDPAGRLVITGQPEQLDNPWGITPFKKVVSLPSRIDPLQTSAVVSLHGRLYVRVPF 60
           VRVQSDPAGRLVI+G+PE  DNPWG+TPFKKVVSLPSRIDP QTSAVV+LHG+L+VRVPF
Sbjct: 593 VRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 652

Query: 61  ER 62
           E+
Sbjct: 653 EQ 654