Jatropha Genome Database

JcCA0317741.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.20 + phase: 0 
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013721 conserved hypothetical protein                          173   1e-44

>30170.m013721 conserved hypothetical protein
          Length = 98

 Score =  173 bits (439), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/96 (86%), Positives = 87/96 (90%), Gaps = 1/96 (1%)

Query: 2  SSNWRRTLGNVRSFIGNSMGGLRGGSNLASWVVAGTLAYFLWVKPSQDLKREQQERXX-X 60
          SSNWRRTLGNVRSFIGNSMGGLRGGSN+ASWVVAGTLAYFLW+KPSQDL+REQ+ER    
Sbjct: 3  SSNWRRTLGNVRSFIGNSMGGLRGGSNIASWVVAGTLAYFLWIKPSQDLRREQEERAAIA 62

Query: 61 XXXDPYRYVEKRKPIPDPQETGLIYGNKNKTKKPVE 96
             DPYRYVEKRKPIPDPQETGLIYGNKNKT KP E
Sbjct: 63 AASDPYRYVEKRKPIPDPQETGLIYGNKNKTSKPAE 98