Jatropha Genome Database

JcCA0317741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0317741.10 + phase: 1 /partial
         (195 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013805 hmg-CoA reductase, putative                             347   2e-96
29682.m000571 hmg-CoA reductase, putative                             334   1e-92
30162.m001288 hmg-CoA reductase, putative                             317   2e-87

>30170.m013805 hmg-CoA reductase, putative
          Length = 576

 Score =  347 bits (889), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 173/195 (88%), Positives = 179/195 (91%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           N+CSDKKPAAVNWIEGRGKSVVCEAIIKEEVVK VLKTNVASLVELN+LKN         
Sbjct: 382 NFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVASLVELNVLKNLTGSAVAGA 441

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAHA NIVSAIFIATGQDPAQN+ESSHCITMMEAVNDGKDLHVSV+MPSIEVGTVG
Sbjct: 442 LGGFNAHAANIVSAIFIATGQDPAQNVESSHCITMMEAVNDGKDLHVSVTMPSIEVGTVG 501

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLV SH
Sbjct: 502 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVKSH 561

Query: 181 MKYNRSSKDVSRVAS 195
           MKYNRSS+DVS+ AS
Sbjct: 562 MKYNRSSRDVSKAAS 576


>29682.m000571 hmg-CoA reductase, putative
          Length = 576

 Score =  334 bits (857), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/195 (83%), Positives = 178/195 (91%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           N+CSDKK AAVNWIEGRGKSVVCEAI+KEEVVK VLKTNVA+LVELN+LKN         
Sbjct: 382 NFCSDKKAAAVNWIEGRGKSVVCEAIVKEEVVKKVLKTNVAALVELNVLKNLTGSAVAGA 441

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAHA NIV+A+++ATGQDPAQN+ESSHCITMMEAVNDGKDLH+SV+MPSIEVGTVG
Sbjct: 442 LGGFNAHASNIVTAVYLATGQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVG 501

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQLASQSACLNLLGV+GASK+SPGSNSRLLATIVAGSVLAGELSLMSA+AAGQLV SH
Sbjct: 502 GGTQLASQSACLNLLGVRGASKDSPGSNSRLLATIVAGSVLAGELSLMSALAAGQLVRSH 561

Query: 181 MKYNRSSKDVSRVAS 195
           MKYNRSSKDVS+ AS
Sbjct: 562 MKYNRSSKDVSKTAS 576


>30162.m001288 hmg-CoA reductase, putative
          Length = 586

 Score =  317 bits (812), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/197 (79%), Positives = 174/197 (88%), Gaps = 2/197 (1%)

Query: 1   NYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKNVLKTNVASLVELNMLKNXXXXXXXXX 60
           N+CSDKKPAAVNWIEGRGKSVVCEAIIK  +VK VLKT+V +LVELNMLKN         
Sbjct: 390 NFCSDKKPAAVNWIEGRGKSVVCEAIIKGNMVKKVLKTSVEALVELNMLKNLTGSAMAGA 449

Query: 61  XXXFNAHAGNIVSAIFIATGQDPAQNIESSHCITMMEAVNDGKDLHVSVSMPSIEVGTVG 120
              FNAHA NIV+A++IATGQDPAQN+ESSHCITMMEAVNDG+DLHVSV+MPSIEVGTVG
Sbjct: 450 LGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAVNDGQDLHVSVTMPSIEVGTVG 509

Query: 121 GGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAGSVLAGELSLMSAIAAGQLVNSH 180
           GGTQLASQSACLNLLGVKGASKE+PG+NSRLLA+IVAGSVLAGELSLM+A+AAGQLV SH
Sbjct: 510 GGTQLASQSACLNLLGVKGASKETPGANSRLLASIVAGSVLAGELSLMAALAAGQLVRSH 569

Query: 181 MKYNR--SSKDVSRVAS 195
           MKYNR  +  DVS+ +S
Sbjct: 570 MKYNRAPTQNDVSKPSS 586